Detailed information on CNT30497787


BLAST search results

BLAST vs Swiss-Prot:
sp|P27789|FER5_MAIZE, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695349Digitaria exilisOryza sativa27.829.2588.48191forward
CNT30523554Digitaria exilisSetaria italica30.4252.5193.3209forward
CNT30443791Digitaria exilisAegilops tauschii29.8443.0788.29205forward
CNT30683395Digitaria exilisTriticum urartu31.7334.4987.16218forward
CNT30366812Digitaria exilisSorghum bicolor30.5755.5692.86210forward
CNT30596694Digitaria exilisOryza meridionalis20.5216.7789.36141forward
CNT30577438Digitaria exilisOryza barthii27.830.3788.48191forward
CNT30579416Digitaria exilisEchinochloa crusgalli31.8825.9592.24219forward
CNT30117488Digitaria exilisOryza nivara27.822.5888.48191forward

Expression of CNT30497787

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MATHAGARRLLLRAVAIDVFCLVAASLAGIGPSKEG

>peptide 2 (32 aa)
MELHVWSVVSCICMQDTRKWNSFSGRRIWLSI*

>peptide 3 (56 aa)
MVGRLMYMYAGYKEMEFILRAAYLVVNIINVTRLIDRWISLILQQDVQLMDTIVLI*

>peptide 4 (35 aa)
MTRRDRRRAGRSLPPRPGRGCTHRRAPAAPPRRRG*

>peptide 5 (66 aa)
MYGRSSHVYVCRIQGNGIHSPGGVFGCQYNQRNSIDRSMDLSYLATRRTADGHYSVDLARMQCMGA*

Sequence

>CNT30497787
GAGCGAAGCCTATCATATCATTCATCCGCAGTAAAAAAAAAATGAAATTGCACATACATAGATGGACCAAGCACAGCAATAATTAACTAACAAAACAGAT
ATATGGAGCTGCATGTATGGTCGGTCGTCTCATGTATATGTATGCAGGATACAAGGAAATGGAATTCATTCTCCGGGCGGCGTATTTGGTTGTCAATATA
ATCAACGTAACTCGATTGATCGATCGATGGATCTCTCTTATCTTGCAACAAGACGTACAGCTGATGGACACTATAGTGTTGATTTAGCACGCATGCAGTG
CATGGGAGCTTAATTGATGATAGAAAATTATTAATTAAGCGGTGAGCTCCTCCTCCTTGTGCGTCTCGATGACGACGTCGGAGGTTGGGTAGGCGGCGCA
GGAGGAGCATGACCCGGCGCGACAGGAGAAGGGCAGGTCGATCCCTTCCTCCTCGGCCTGGTCGAGGATGTACACATCGTCGGGCACCTGCAGCTCCACC
TCGCCGTCGGGGGTGATGAGCTTGACGTTGTAGGTGGCCTGAGCACGCAGCCTGGCGAACCTTCCGGTGGTGGCTGGCATGGCGACGCACGCCGGCGCGC
GGAGGCTGCTGCTGAGGGCGGTGGCCATTGATGTTTTTTGTTTGGTAGCAGCGAGCTTAGCTGGGATCGGTCCAAGTAAGGAAGGAA