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Detailed information on CNT30497736

BLAST search results

BLAST vs Swiss-Prot:
sp|O22914|CP121_ARATH, E-value = 5e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674439	Digitaria exilis	Setaria viridis	18.59	54.89	92.25	129	forward
CNT30523223	Digitaria exilis	Setaria italica	34.87	48.59	89.67	242	forward
CNT30290105	Digitaria exilis	Triticum aestivum	32.28	49.34	86.16	224	forward
CNT30387749	Digitaria exilis	Triticum turgidum	33.14	36.11	86.09	230	forward
CNT30592246	Digitaria exilis	Musa acuminata	24.06	28.5	86.83	167	forward
CNT30246479	Digitaria exilis	Avena sativa	33.43	34.89	84.91	232	forward
CNT30659185	Digitaria exilis	Triticum dicoccoides	33.14	43.15	85.65	230	forward
CNT30134237	Digitaria exilis	Lolium perenne	33	36.41	85.15	229	forward
CNT3015512	Digitaria exilis	Zea mays	33.86	27.33	83.83	235	forward
CNT30216686	Digitaria exilis	Kalanchoe fedtschenkoi	31.27	37.8	83.41	217	forward
CNT30654798	Digitaria exilis	Rosa chinensis	18.73	24.95	82.31	130	forward
CNT30580422	Digitaria exilis	Echinochloa crusgalli	33.43	34.58	87.07	232	forward
CNT30557621	Digitaria exilis	Panicum hallii	31.56	39.89	92.69	219	forward

Expression of CNT30497736

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MKIHQVSEPPLRFAVLLIVFVYTRFITHRLSCRRRGTRRSRGSPCSTPRAGRCSP*

>peptide 2 (73 aa)
MLSDTCSEIPGGVAGPLDLTTANPPPPRRAATAGNQTRPAAAATTLLLGSTSAAAAKVAGVERLATVDAIFCS*

Sequence

>CNT30497736
CTCTCAGTCTGATTGATTCAAGCAAGCGGGTTGCTAACGTATGTTATTATATTCAACTATATTAACACAAAGTATTAAGTATACTGATTAAATACAGGAA
CAGAAGCATAAAGCTTCATGAAGATTCACCAAGTTTCAGAGCCTCCTCTACGCTTCGCTGTCCTTTTAATCGTCTTCGTCTATACCAGATTCATCACACA
CAGGCTCAGTTGTCGTAGACGCGGCACTCGTCGGTCTCGGGGTTCTCCTTGCAGTACTCCTCGAGCGGGTCGCTGCTCCCCTTGAGCTTGTCGCGCGCGT
GGCTCGCCGCGGCGCTGAGCTCCTCCACCTCGTCCCACGCCGCCGCGCAGTCCCCGGTGTCCTTCTCCTCGGCGCACGTCTCCTCCGCCTTCTTGATGCT
GTCCGACACCTGCTCCGAGATCCCCGGCGGCGTCGCCGGCCCGCTCGACCTCACCACGGCGAACCCTCCTCCTCCGCGGCGCGCCGCCACGGCGGGGAAC
CAGACGCGGCCGGCGGCGGCGGCGACAACCCTCCTCCTCGGGAGCACGTCGGCGGCCGCCGCGAAGGTCGCCGGAGTAGAGAGGCTCGCCACCGTCGACG
CCATCTTTTGCAGCTAGCAGCGGTTGTTACGAACTTCTCGTGTGTGATCTGATGCGTGGATTTACTCGAAGAACTGTACGACGCGTTGCTCAGG