Detailed information on CNT30497720


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674975Digitaria exilisSetaria viridis55.2789.0385.92341forward
CNT30522744Digitaria exilisSetaria italica30.9616.5191.62191forward
CNT3014272Digitaria exilisZea mays30.4751.5184.57188forward
CNT30681876Digitaria exilisTriticum urartu30.6319.3681.48189forward
CNT30363688Digitaria exilisSorghum bicolor32.4131.886200forward
CNT30369272Digitaria exilisOryza glumipatula25.1224.5380155forward
CNT30594623Digitaria exilisEragrostis curvula30.4769.1285.11188forward

Expression of CNT30497720

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGRRKQAQGGRDMVKVSEAEEVSSKVLELGQWFPQA*

>peptide 2 (46 aa)
MVSSALQPSERMASPSGQTTRPLRGGTRQTPMHGASQTSTGWQRHG*

>peptide 3 (46 aa)
MGFSREVYWFASTSIQTSTIADSARLPSFNSSGLFLRAAYLQIARDS

>peptide 4 (51 aa)
MLIFHYKSRPDHTHRSTKHKTSTLSAHRNSTEREQANTETELWLISKHHLR*

Sequence

>CNT30497720
CGTCTAGCTCCAGGCACCTAACAGGTTGAGAGTTTATTATCATAAAGTTCCCAAGACAAGAGCACAGGAATGCTCATATTTCATTACAAATCAAGACCGG
ATCACACGCATCGTAGCACAAAGCATAAAACTTCAACATTGAGTGCACATCGTAACAGCACAGAGCGTGAACAAGCAAACACCGAGACGGAACTCTGGCT
TATTTCCAAGCACCACCTGCGCTAGGACAACCACTTCAAGCAGATGGTTTCATCAGCGCTGCAACCTTCTGAACGGATGGCCTCGCCATCAGGCCAGACC
ACCAGGCCTTTACGTGGGGGTACCCGTCAAACACCGATGCATGGGGCGTCGCAAACAAGCACAGGGTGGCAGAGACATGGTTAAGGTCAGCGAGGCTGAG
GAAGTCTCCAGCAAGGTACTTGAACTTGGTCAGTGGTTCCCCCAAGCATAGGTTTGACGAGGCACTCGAAGAGGATGGGGTTCAGCAGAGAGGTGTACTG
GTTCGCCTCCACCTCCATCCAAACATCCACCATTGCTGACTCCGCAAGACTGCCTTCCTTCAACAGCTCCGGTTTGTTTTTACGGGCTGCATACTTGCAA
ATTGCACGTGATTCTGA