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Detailed information on CNT30497700


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Digitaria exilisSetaria viridis33.0944.5895.03181reverse complement
CNT30524663Digitaria exilisSetaria italica57.453.9596.5314reverse complement
CNT30641615Digitaria exilisNymphaea colorata23.2222.9292.13127reverse complement
CNT30549212Digitaria exilisIpomoea triloba44.248.0292.56242reverse complement
CNT30272552Digitaria exilisChenopodium quinoa43.1418.7691.53236reverse complement
CNT30730619Digitaria exilisCorchorus capsularis25.0557.3290.51137reverse complement
CNT30632284Digitaria exilisVigna unguiculata25.0516.7386.86137reverse complement
CNT30195089Digitaria exilisPisum sativum27.978.894.12153forward
CNT30290333Digitaria exilisTriticum aestivum36.7553.0397.51201reverse complement
CNT30220801Digitaria exilisHordeum vulgare3447.9498.92186reverse complement
CNT30396824Digitaria exilisTriticum turgidum3418.4798.92186forward
CNT30569398Digitaria exilisActinidia chinensis43.8812.2892.92240reverse complement
CNT30511593Digitaria exilisSolanum lycopersicum25.0521.0488.32137reverse complement
CNT30552690Digitaria exilisOryza glaberrima47.917.1197.71262reverse complement
CNT30442196Digitaria exilisAegilops tauschii22.1214.27100121forward
CNT30208971Digitaria exilisHelianthus annuus24.6833.0990.37135reverse complement
CNT30720843Digitaria exilisTriticum spelta21.2153.95100116reverse complement
CNT30347837Digitaria exilisEragrostis tef56.3139.9597.4308forward
CNT30363261Digitaria exilisSorghum bicolor99.0942.5898.52542reverse complement
CNT30620564Digitaria exilisCajanus cajan31.263.394.74171forward
CNT30596724Digitaria exilisOryza meridionalis68.9215.5898.67377forward
CNT30410483Digitaria exilisPapaver somniferum45.8912.2789.24251reverse complement
CNT3037013Digitaria exilisCucumis melo44.2430.7993.39242forward
CNT30104377Digitaria exilisOryza rufipogon60.8825.8997.6333forward
CNT30174498Digitaria exilisVigna angularis18.462089.11101reverse complement
CNT30115272Digitaria exilisEutrema salsugineum25.0528.1988.32137reverse complement

Expression of CNT30497700

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MREILASNCEAPILNWKGHQRTLPSLSIYPRDGRAELFFGFFIFSSKS*

>peptide 2 (37 aa)
MKIDGKCLIYLIRSCRNKVQIVRSLGCLSCIHHCTST*

Sequence

>CNT30497700
CGACCTTTGCGTTTTGGATTTGGATCTTTTTCGTATTTCAAAATAGTGAAAAAGTCAAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTAT
TTTGCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCAGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGA
ATATCGAACCATGAACGAGAAAAGGCATGAGAGAAATATTGGCTAGTAATTGTGAAGCCCCAATTCTTAACTGGAAGGGACACCAAAGGACTCTGCCCTC
CCTCTCTATTTATCCAAGAGATGGAAGGGCAGAGCTTTTTTTTGGTTTTTTCATCTTTTCATCAAAGAGTTGAACAATGAAGATAGATGGCAAGTGCCTG
ATCTATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTA
AACGGCTCGTCTCGCCGCTACCTTATCCTATTTCCATTCCTTTTTTG