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Detailed information on CNT30497590


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 5e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675148Digitaria exilisSetaria viridis19.6657.195.38173forward
CNT30535986Digitaria exilisEucalyptus grandis37.3944.9581.76329forward
CNT30515361Digitaria exilisJuglans regia23.7547.2979.43209forward
CNT30378380Digitaria exilisArabidopsis thaliana13.323.7384.62117forward
CNT3091254Digitaria exilisSolanum tuberosum29.8917.4179.47263forward
CNT30181115Digitaria exilisSecale cereale38.8625.7988.89342forward
CNT30290560Digitaria exilisTriticum aestivum38.8633.6689.47342forward
CNT30220813Digitaria exilisHordeum vulgare7.2723.192.1964forward
CNT30386162Digitaria exilisTriticum turgidum38.0733.6389.25335forward
CNT30567883Digitaria exilisActinidia chinensis30.9112.6277.94272forward
CNT30592113Digitaria exilisMusa acuminata37.6145.4786.1331forward
CNT30542247Digitaria exilisBrassica napus14.3221.1480.95126forward
CNT30234321Digitaria exilisBrassica oleracea30.2319.7277.82266forward
CNT30436551Digitaria exilisAegilops tauschii38.8636.1589.47342forward
CNT30244672Digitaria exilisAvena sativa38.8646.0390.35342forward
CNT30659249Digitaria exilisTriticum dicoccoides38.8633.1189.18342forward
CNT30263014Digitaria exilisBrassica rapa30.2329.8978.57266forward
CNT30614251Digitaria exilisArabis alpina11.4835.5682.18101forward
CNT30133074Digitaria exilisLolium perenne7.2722.398.4464forward
CNT3010855Digitaria exilisZea mays38.8660.9691.52342forward
CNT30607994Digitaria exilisGossypium raimondii30.1130.5379.25265forward
CNT30681617Digitaria exilisTriticum urartu38.0727.9989.25335forward
CNT30342715Digitaria exilisEragrostis tef38.8638.0492.69342forward
CNT30368483Digitaria exilisSorghum bicolor38.8628.2294.44342forward
CNT30148108Digitaria exilisBrachypodium distachyon6.0226.2494.3453forward
CNT30584070Digitaria exilisEchinochloa crusgalli40.1129.9794.05353forward
CNT30557822Digitaria exilisPanicum hallii32.6141.1283.62287forward

Expression of CNT30497590

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MTSPVSGLLLVTLKVMLPVDDAAFLMFSFTSSSSSPLPPAGSATALSYPVEPPRPLGSRKEEPR*

>peptide 2 (47 aa)
MERCKEMVYGKNNLISTYTRTRQPSSLLLSKCKASITWGVHKNTINK*

Sequence

>CNT30497590
TAAACAGCACTAGTGGGTCTTCCTCCCACTCTGGCTCTTGTTGATATGCTTGTAAAATTATGGAAAGATGTAAAGAAATGGTGTATGGGAAGAACAATTT
AATAAGCACATATACACGTACTAGACAGCCGTCCTCTCTCCTCTTGTCCAAATGCAAAGCGAGCATTACATGGGGAGTTCATAAGAACACAATTAATAAA
TAAGAAGTGCATATACTAAAATTAAAAATCAACAGCCCGTATTTGCATTAATTGATACACAAGCAATGCCTCCACCTTCCATTCCTCTCATAAATTTTTC
ATCGTACACGTTGCCCACCGATCAGCAGGGACCGTACGTCTAAGATTCGAGCTGCGCGTACCAGATCCCCTGGATCTTGACATCCTTGGGCGCCTTGGCC
CCAAGGTCGGTGTCCGACGGCTGCACACTCTCGAAGACGCCGATGACCTCGCCGGTCTCCGGGTTGCTCTTGGTGACGCTCAAGGTGATGTTGCCCGTCG
ACGACGCGGCGTTCTTGATGTTCTCCTTCACGAGCTCCTCCTCGTCTCCCCTGCCTCCGGCGGGTAGCGCCACGGCGTTGTCGTACCCAGTAGAGCCACC
ACGTCCCTTGGGGTCGAGGAAAGAAGAGCCACGGTAGCTGGGCACGAGGAACTGCCCGCCGAAGCTCTCCGGCTTGCCGGTGTCGACGCCGAAGGCCCTG
GCGACGTGGGAAGGCTGACGGGACGGGAGCGAGACGGTGGCCCGGCCGCCGATCTTGGCCGGCTGCATCAGGGTGGCCGCGGCTTGGAGTGACGCTGCCA
TGGCCGTCTCGTCGCTGCGGCTGCGCTGTCCTAGCTGGGACCTCTTGCCCCTTTGGTATGTGTCGTGAGTGTTATCTATG