Detailed information on CNT30497500


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 8e-87

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674820Digitaria exilisSetaria viridis20.6857.7493.14306forward
CNT30523034Digitaria exilisSetaria italica17.1658.1296.85254forward
CNT30456592Digitaria exilisSaccharum spontaneum18.5833.4596275forward
CNT30338860Digitaria exilisEragrostis tef15.9528.7196.19236forward
CNT30580001Digitaria exilisEchinochloa crusgalli20.4141.3794.7302forward

Expression of CNT30497500

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLTYLKATHLITYQQLRQLPQKIDNYSNILSERLFTARHKLLITLIV*

>peptide 2 (57 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPLPAAAALT*

>peptide 3 (75 aa)
MVSIVSPQQIGDNAFYSIIADEHTIHHRKSLKTSYTLSDQLTGINQSTQNNSVIKQTIGIITLTDSAVNSFPYTR*

>peptide 4 (41 aa)
MATIIMEKKLQNSQLISNDLTIDSRSTTFCILWCPLCHLNR*

>peptide 5 (44 aa)
SQCNSISLPFAFTFTNQTRPKIKKNKGDAFYSDMKWYSTQQWLR*

>peptide 6 (33 aa)
PSAIRFHYRLHLHSRTKHVLKSRKIKVMHFTQI*

Sequence

>CNT30497500
GTCCCAGTGCAATTCGATTTCATTACCGTTTGCATTTACATTCACGAACCAAACACGTCCTAAAATCAAGAAAAATAAAGGTGATGCATTTTACTCAGAT
ATGAAGTGGTACTCAACCCAACAATGGCTACGATAATCATGGAAAAAAAGCTTCAAAATTCACAGCTAATTTCCAACGACCTGACAATAGATAGCAGAAG
CACAACATTTTGCATCTTATGGTGTCCATTGTGTCACCTCAACAGATAGGTGACAATGCCTTTTATAGCATAATAGCAGATGAGCATACGATCCATCACA
GAAAAAGTTTGAAAACCAGTTACACGCTATCAGATCAACTCACTGGCATCAATCAAAGCACACAGAATAACAGTGTCATCAAACAAACAATTGGTATTAT
AACATTAACTGATTCAGCAGTGAATTCATTTCCATATACCAGATAACAAGAGCAGAAGCACACCATTTTGCACCTAATTGTGTTGATTGTCACCTTGACT
TTTAAACATTTTGTATGCTAACATATTTAAAAGCAACGCATTTAATAACATATCAGCAACTGAGACAACTACCACAGAAGATTGACAACTACAGTAACAT
CTTATCGGAACGACTATTCACTGCAAGACACAAATTACTAATAACACTCATAGTATAAGTTAACACAAACATAATTTGAATTCAACAGTGCCTGCAGGAT
CCATAACGACATAATATCATCAAAACCAAAAGTACGCACCACCATAGGAGATGCAGGAGTTCTGTTCCAAGAAAACTACTTAACATTCGACAAAAAAAGA
AGCTTTTATCATCTAGCAAGACTTTCCATTTCCCTCCCCATCATAACAGAGGGGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACC
GCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTCCCCGCGCCGCACTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGGTGGCGTCG
TCGACCTTGTAGAACTGGAGCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGC
CTCCCCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCTAGCTGCTTGCCGGCGAAGATGAG
GCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCC
GTCAGGGTCTTCACGAAGATCTGCATCTTGGCAGGCGCGCCCTTGCCGGCGGCGGCCGCCCTTACCTGAGGTGGCGGAGGAGGCGGCGCTGCTTCTCGCC
TGCGGCGGCGGGGTGGAGTGGTATGGTCGACTAGGGTTTTGGGGCGGGGAGAGAGACGACGCTTTTATAGCTGGGGCGAG