Detailed information on CNT30497456


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532843Digitaria exilisEucalyptus grandis57.5322.9591.67168forward
CNT30512729Digitaria exilisJuglans regia95.5527.1186.02279forward
CNT3045373Digitaria exilisPrunus dulcis60.2722.4586.36176forward
CNT30510505Digitaria exilisSolanum lycopersicum95.2125.689.57278forward
CNT3041882Digitaria exilisChlamydomonas reinhardtii32.539.4483.1695forward
CNT30345702Digitaria exilisEragrostis tef51.0318.4487.92149forward
CNT30359537Digitaria exilisLactuca sativa42.8118.9785.6125forward
CNT30332479Digitaria exilisDioscorea rotundata24.3225.0987.3271forward
CNT30149525Digitaria exilisBrachypodium distachyon23.6322.8586.9669forward

Expression of CNT30497456

Peptides detected in this lncRNA

>peptide 1 (41 aa)
NPPGSWNDLATTPVNCISMKNNITDLKANTSHVLLSQGTLL*

>peptide 2 (65 aa)
MFSSARAPSFDAHWKPATTESLISLRYCTPLHISTTMFGPVVSGPKHQIFLARSLSHPNSSERIFE

Sequence

>CNT30497456
AACCCTCCTGGCAGTTGGAATGACCTGGCCACCACCCCTGTGAATTGCATCAGCATGAAGAACAACATCACAGACCTCAAAGCAAATACCTCGCATGTTC
TCCTCAGCCAGGGCACCCTCCTTTGACGCCCACTGGAAGCCAGCAACAACAGAATCCTTGATTTCATTGAGATACTGCACACCCTTACACATATCCACAA
CCATGTTCGGGCCCGTGGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCAAGATCCTTGTCCCACCCAAACTCCTCAGAGAGGATCTTTGAG