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Detailed information on CNT30497331


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673652Digitaria exilisSetaria viridis20.2940.895.65184forward
CNT30183892Digitaria exilisSecale cereale17.9730.8187.73163forward
CNT30307914Digitaria exilisTriticum aestivum17.9740.1587.73163forward
CNT30226503Digitaria exilisHordeum vulgare17.7528.786.96161forward
CNT30400060Digitaria exilisTriticum turgidum17.9730.9387.73163forward
CNT30256907Digitaria exilisAvena sativa24.5977.9783.86223forward
CNT309612Digitaria exilisZea mays20.1819.4592.9183forward
CNT30344604Digitaria exilisEragrostis tef20.5120.5594.09186forward
CNT30580567Digitaria exilisEchinochloa crusgalli27.5633.4793.2250forward
CNT30115987Digitaria exilisOryza nivara8.634.2194.8778forward

Expression of CNT30497331

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MVTRPEVVALAQNGSRLDLDEGASRLGTPTALQLLSPLDDAIAIAASCCFPVCVLILRRIREEGGKRSSGV*

>peptide 2 (76 aa)
MPKEQLQIKVRSMPRPHRVIVLLVIVHQKYICSARSRRTYHGEHGPPAVVDLGLLEPLEVLRHGGEAGRASTRRTW*

>peptide 3 (91 aa)
MVLGMMMSPMLLCHGSARWVARFSSGPVRGLTAGDGRPLLRLHPVAEAQRLRHQDPGLIDAKRTIANKGQVHATPPSCNRVISDCSSEVYM*

Sequence

>CNT30497331
ATCAAAAGTTGAGTCCATTCACAAGATCGAGTAGCCGCTACTAAACCGTAAGCTTTACATTACAAGGCGTTCCCGGCGGGCCGGAATGTCGCCGTCTTTC
ATCATACACAGTTCCTGCACGCACGCAGGCAGTGCCCGATAACCAACCAATCACACGCACACACACAAAACACCATCCACACTCCCACCACAGCCCATCT
CTCCTCTCTGTCTCATCTCATTCTCTGGCAATCACCTCAAGTCGCTCAAGGGTAGATGGTCCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCATGGG
TCGGCGAGGTGGGTGGCCAGGTTCTCCAGCGGCCCGGTACGTGGCCTGACCGCCGGGGACGGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCGAGGCCC
AGCGCCTCCGGCACCAAGATCCCGGGCTGATCGATGCCAAAAGAACAATTGCAAATAAAGGTCAGGTCCATGCCACGCCCCCATCGTGTAATCGTGTTAT
TAGTGATTGTTCATCAGAAGTATATATGTAGTGCACGTAGCAGGCGTACGTACCACGGCGAGCATGGCCCACCGGCAGTGGTAGACCTCGGACTCCTTGA
ACCGCTCGAAGTTCTCCGGCACGGTGGCGAGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCACAGAACGGGA
GCCGGCTGGACCTGGACGAAGGCGCCAGCAGGCTGGGGACGCCCACGGCGCTGCAGCTCCTTAGCCCGCTCGACGACGCCATTGCCATTGCTGCTAGCTG
CTGCTTCCCGGTGTGTGTGCTGATCCTGAGGCGGATACGAGAGGAGGGGGGGAAGAGAAGTAGTGGCGTTTGAGAGCGGAGCAGAATCTGAGGCTACTAT
TAAGAGC