Detailed information on CNT30497299


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30609040Digitaria exilisGossypium raimondii15.3333.783.87155forward

Expression of CNT30497299

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVRWCSAKAMATNSMTRMVGRARLAGHPLGGHGDAAGGGGVGTEREPAGPGRRRQQAGDAHGAAAP*

>peptide 2 (71 aa)
MVTRPEVVALAQNGSRLDLDEGASRLGTPTALQLLSPLDDAIAIAASCCFPVCVLILRRIREEGGKRSSGV*

>peptide 3 (30 aa)
PGDRNSVNYFKASLISDQKLSPFTRSSSRY*

>peptide 4 (56 aa)
MGRRGGWPGSPAARCLGTPTAARRTPRTPASPAGLLDHTSIMLILSKCFDDKCSDR*

>peptide 5 (58 aa)
MVLGMMMSPMLLCHGSARWVARFSSGPVPGYADCCTQNPTNASIASRPARSHIDHVNS*

Sequence

>CNT30497299
CCGGGCGATAGGAATTCAGTAAATTATTTTAAAGCCAGCTTGATTTCGGATCAAAAGTTGAGTCCATTCACAAGATCGAGTAGCCGCTACTAAACCGTAA
GCTTTACATTACAAGGCGTTCCCGGCGGGCCGGAATGTCGCCGTCTTTCATCATACACAGTTCCTGCACGCACGCAGGCAGTGCCCGATAACCAACCAAT
CACACGCACACACACAAAACACCATCCACACTCCCACCACAGCCCATCTCTCCTCTCTGTCTCATCTCATTCTCTGGCAATCACCTCAAGTCGCTCAAGG
GTAGATGGTCCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCATGGGTCGGCGAGGTGGGTGGCCAGGTTCTCCAGCGGCCCGGTGCCTGGGTACGCC
GACTGCTGCACGCAGAACCCCACGAACGCCAGCATCGCCAGCCGGCCTGCTCGATCACACATCGATCATGTTAATTCTTAGCAAGTGCTTTGATGACAAG
TGCAGTGATCGATAGGATATGAATATATCACAAGGGACGCGTGATTATAGGGCTCACCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTGACGGG
GTCCTTGGAGAAGCCGAGCGGGTCGAAGGCGCCGCCGGGGTACTTCTTCTTCTCAGGGTCCTTCTCCATGGTGCGCTGGTGCTCGGCGAAGGCGATGGCC
ACGAACTCGATGACCAGGATGGTGGGCAGGGCGAGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCACAGAAC
GGGAGCCGGCTGGACCTGGACGAAGGCGCCAGCAGGCTGGGGACGCCCACGGCGCTGCAGCTCCTTAGCCCGCTCGACGACGCCATTGCCATTGCTGCTA
GCTGCTGCTTCCCGGTGTGTGTGCTGATCCTGAGGCGGATACGAGAGGAGGGGGGGAAGAGAAGTAGTGGCGTTTGAGAGCGGAGCAGAATCTGAGGCTA
CTATTAAGAGC