« Back to Digitaria exilis search


Detailed information on CNT30497263


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9T2L6|PSAA_SORBI, E-value = 5e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Digitaria exilisOryza sativa51.356.5193.09362forward
CNT30526549Digitaria exilisPhaseolus vulgaris49.2252.5883.29347forward
CNT30201935Digitaria exilisPisum sativum51.3521.2484.81362forward
CNT30224362Digitaria exilisHordeum vulgare51.3522.893.09362forward
CNT30713469Digitaria exilisMalus domestica golden26.6737.688.83188forward
CNT30627902Digitaria exilisDaucus carota42.8433.8685.43302forward
CNT30688863Digitaria exilisTriticum urartu51.3517.2194.2362forward
CNT30362291Digitaria exilisSorghum bicolor35.3262.7294.38249forward
CNT3057361Digitaria exilisAmborella trichopoda50.57.0881.46356forward
CNT30333024Digitaria exilisCynara cardunculus24.9617.2786.93176forward

Expression of CNT30497263

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIASRCLRTPEQTRPRTTFCLAFPCFTRLAFDLLLVLPTTLEGSKRFTTL*

Sequence

>CNT30497263
AGTATTAATACAGTCACATGGATGGTAAATGCGTAAATGTGATGGACTAAAAAATCTACGGTTCCTAATGGAATAGGTAACAAAGCTACTTTGCCGCCTA
CAGCTATTAACTCCCCGCCTCCCCACGTTAAGCTGGTACTTGTTGCACCAGGAGCTGTTACGCCAGGCGTGCTAGCATGGATATTTTGTATCCATTGAGC
AAAGATGGGTTGTAATTGTATGACAGTATCCGAAAACATATCTTGGGGACGGCCTAAAGCACTCATGGTATCATTATGAATATACAAGCCAAAACTGTGA
AAACCTAGAAATATACATACCCAGTTAAGGTGGGATATGATTGCATCGCGGTGTCTAAGCACTCATGGTATCATTATGAATATACAAGCCAAAACTGTGA
AAACCTAGAAATATACGTACCCAGTTAAGGTGGGATATGATTGCATCGCGGTGTCTAAGGACGCCAGAGCAAACGAGACCCCGGACGACTTTCTGCCTCG
CCTTCCCTTGCTTCACTCGATTAGCATTTGACTTGCTGCTGGTCCTTCCTACAACACTTGAGGGCAGCAAGCGATTCACTACACTGTAGTGTATAGTGAT
CAACCAATCACAAGGAAAAAAGATTGTAGCCTTGTACTGCAGAGCTACAAGGCTTAAACTGCATGAAAGGTGCCGGTATGAGTGTATGACAGAACCACAT
ATAGC