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Detailed information on CNT30497042


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 3e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Digitaria exilisSetaria viridis16.7322.3596.99133forward
CNT30546130Digitaria exilisIpomoea triloba15.9762.2583.46127forward
CNT30515355Digitaria exilisJuglans regia31.8241.1481.03253forward
CNT30525458Digitaria exilisPhaseolus vulgaris21.519.4379.53171forward
CNT30629770Digitaria exilisVigna unguiculata7.324.1787.9358forward
CNT30304990Digitaria exilisTriticum aestivum15.3548.6190.16122forward
CNT30400439Digitaria exilisTriticum turgidum21.7665.2894.22173forward
CNT30567058Digitaria exilisActinidia chinensis17.1137.7887.5136forward
CNT30588696Digitaria exilisMusa acuminata17.8652.7989.44142forward
CNT30443761Digitaria exilisAegilops tauschii21.7636.4294.22173forward
CNT30256504Digitaria exilisAvena sativa26.1648.3792.79208forward
CNT30669889Digitaria exilisTriticum dicoccoides15.3548.0390.16122forward
CNT307903Digitaria exilisZea mays30.0662.2495.4239forward
CNT30346386Digitaria exilisEragrostis tef26.7930.5295.77213forward
CNT3058384Digitaria exilisAmborella trichopoda25.9143.1982.52206forward
CNT30102128Digitaria exilisOryza rufipogon25.2834.7293.53201forward
CNT30576871Digitaria exilisOryza barthii25.2823.3793.53201forward
CNT30580093Digitaria exilisEchinochloa crusgalli30.0630.8497.07239forward
CNT30551236Digitaria exilisOryza brachyantha31.8225.4394.07253forward

Expression of CNT30497042

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MGLRGGWPGSPAARCPGTPTAARRTPRTPASPAALLDHTSIYHVNILANGLMTSAVINRS*

>peptide 2 (33 aa)
MVRWCSAKAMATNSITRMVGSVPHGTGMPRYVA*

>peptide 3 (57 aa)
MVLGMMMSPMLLCHGSARWVARFSSGPVPGYADCCTQNPTNASIASRPARSHIDISC*

>peptide 4 (34 aa)
LLNRKLYITRRSRPAGMSPSFIIHSSCTHAGSAR*

>peptide 5 (33 aa)
MAPGCPGTWPDRRGRPPTPAPSPSWARPRRCSS*

Sequence

>CNT30497042
GCTACTAAACCGTAAGCTTTACATTACAAGGCGTTCCCGGCCGGCCGGAATGTCGCCGTCTTTCATCATACACAGTTCCTGCACGCACGCAGGCAGTGCC
CGGTAACCAACCAATCACACGCACACACACAAAACACCATCCACACTCCCACCACAGCCCATCTCTCCTCTCTGTCTCATCTCATTCTCTGGCAATCACC
TCAAGTCGCTCAAGGGTAGATGGTCCTGGGGATGATGATGTCTCCGATGTTGTTGTGCCATGGGTCTGCGAGGTGGGTGGCCAGGTTCTCCAGCGGCCCG
GTGCCCGGGTACGCCGACTGCTGCACGCAGAACCCCACGAACGCCAGCATCGCCAGCCGCCCTGCTCGATCACACATCGATATATCATGTTAATATATTA
GCAAATGGTTTGATGACAAGTGCAGTGATCAATAGGTCGTGACGGGAGGCTCACCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTGACGGGGTC
CTTGGAGAAGCCGAGCGGGTCGAAGGCGCCGCCGGGGTACTTCTTCTTCTCAGGGTCCTTCTCCATGGTGCGCTGGTGCTCGGCGAAGGCGATGGCCACG
AACTCGATCACCAGGATGGTGGGCAGCGTGCCCCATGGCACCGGGATGCCCAGGTACGTGGCCTGACCGCCGGGGACGGCCGCCCACTCCTGCGCCTTCA
CCCAGCTGGGCACGCCCACGGCGCTGCAGCTCCTGAGCCCGCTCGACGACGCCATTGCCATTGCTGCTAGCTCACGCTTCCCGGTGCGTGTGCTG