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Detailed information on CNT30496965


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672463Digitaria exilisSetaria viridis46.1832.3796.82157forward
CNT30520893Digitaria exilisSetaria italica69.1264.3896.17235forward
CNT30532753Digitaria exilisEucalyptus grandis30.2941.5383.5103forward
CNT30178026Digitaria exilisSecale cereale31.7619.3588.89108forward
CNT30285918Digitaria exilisTriticum aestivum31.7622.9887.96108forward
CNT30384456Digitaria exilisTriticum turgidum31.7620.1987.96108forward
CNT30591852Digitaria exilisMusa acuminata28.2423.0291.6796forward
CNT30553623Digitaria exilisOryza glaberrima16.7622.7192.9857forward
CNT30435366Digitaria exilisAegilops tauschii31.7623.7488.89108forward
CNT30241486Digitaria exilisAvena sativa31.7629.1992.59108forward
CNT30655703Digitaria exilisTriticum dicoccoides31.7630.0888.89108forward
CNT30131217Digitaria exilisLolium perenne31.7621.6492.59108forward
CNT30679604Digitaria exilisTriticum urartu31.7632.1488.89108forward
CNT30704201Digitaria exilisPrunus avium25.2933.284.8886forward
CNT30318832Digitaria exilisAsparagus officinalis35.595.9386.78121forward
CNT30149479Digitaria exilisBrachypodium distachyon29.1225.7187.8899forward
CNT30582819Digitaria exilisEchinochloa crusgalli3012.2299.02102forward

Expression of CNT30496965

Peptides detected in this lncRNA

>peptide 1 (52 aa)
DRSRREPGVGCRAMARRSRRGPTARWCCRCPRGRSRRSCRRTWPPRRRGATA*

>peptide 2 (88 aa)
IEAVVNLEWVVGRWRVGAVEVPLPGGVADVLEVEVDALVAVLGHHGGAGRRPDDGEPPAGDGAAGEALHGDRLHGDGGEGGHGGWRAR*

>peptide 3 (29 aa)
MELPARPFTATGCTETAAREAMAVGARDD*

Sequence

>CNT30496965
CGATCGAAGCCGTCGTGAACCTGGAGTGGGTTGTAGGGCGATGGCGCGTCGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCCTCGAGGT
CGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGCGGGGCGACGGCCTGACGACGGCGAGCCTCCTGCCGGAGATGGAGCTGCCGGCGAG
GCCCTTCACGGCGACCGGCTGCACGGAGACGGCGGCGAGGGAGGCCATGGCGGTTGGCGCGCGCGATGACTAGCTTGTGACGAGGTTACTACACAGATAG
TAGAGTGTTGCAGTGCGTATGTATGTGCACAAACTTAATT