Detailed information on CNT30496955


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7EAG4|DMC1B_ORYSI, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Digitaria exilisQuercus suber3845.8481.87171forward
CNT30224824Digitaria exilisHordeum vulgare34.8928.4987.9157forward
CNT3068273Digitaria exilisLeersia perrieri44.6726.5987.06201forward
CNT30105029Digitaria exilisOryza longistaminata52.8951.6386.13238forward
CNT30104659Digitaria exilisOryza rufipogon47.5644.2186.92214forward
CNT30578572Digitaria exilisOryza barthii43.3341.6787.69195forward
CNT30582636Digitaria exilisEchinochloa crusgalli71.1165.8489.06320forward
CNT30118011Digitaria exilisOryza nivara27.5631.3190.32124forward
CNT30593120Digitaria exilisEragrostis curvula53.7885.5188.84242forward
CNT30604793Digitaria exilisOryza punctata34.6733.6989.74156forward

Expression of CNT30496955

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TVIHKLYKEIYILGTIVLISSQCRSAQQPMQHRVCLLCLSEI*

Sequence

>CNT30496955
CACAGTAATACATAAACTTTATAAGGAGATATATATTCTCGGTACAATTGTTCTGATCTCATCTCAGTGCAGAAGTGCCCAACAGCCTATGCAACATAGA
GTTTGCCTACTTTGTCTGTCAGAGATATAAAACAGAGTAACACCAATGTAGCTTTGCTCGATGTACAGATGTATGTCGCAAGTTTAACTAAAGAAGCTTG
AACTATCCTAGGACAGGAAGCACTCTGAGCGGATAATCAGTCTTTTGCATCCATTATCCCACCCGATGTAACCTGAAAAACGTCTTCTCCCTCAGGAAGG
TTAGGGGCATCAAAAATCTTGCATACTCGCTGTTCGCCTTTGCCTTTCCTCAGCATCAACCTGATGGTGGCAGCATGAGCCAACACGTGGCCGCCTGCTG
GCTTCTTTGGATCGGTTATGAACATGCCACCTCCTGGATCAGCAATCACT