Detailed information on CNT3049694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT000966, E-value = 5e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Cucumis sativusOryza sativa36.038.4789.72107forward
CNT30530127Cucumis sativusEucalyptus grandis23.9122.2692.9671forward
CNT30378683Cucumis sativusArabidopsis thaliana38.7214.3295.65115forward
CNT30402788Cucumis sativusBeta vulgaris25.255.9686.6775forward
CNT30300480Cucumis sativusTriticum aestivum36.038.1789.72107forward
CNT3089382Cucumis sativusVigna radiata39.0625.4492.24116forward
CNT30540534Cucumis sativusBrassica napus37.719.7694.64112forward
CNT30554921Cucumis sativusOryza glaberrima22.2218.792.4266reverse complement
CNT30145113Cucumis sativusMedicago truncatula39.7335.9888.98118forward
CNT30441777Cucumis sativusAegilops tauschii36.0319.0188.79107forward
CNT3059907Cucumis sativusArabidopsis lyrata20.5411.9898.3661forward
CNT30263944Cucumis sativusBrassica rapa29.973.6396.6389forward
CNT3018289Cucumis sativusZea mays36.034.1289.72107forward
CNT30606924Cucumis sativusGossypium raimondii37.3713.5795.5111forward
CNT3068455Cucumis sativusLeersia perrieri36.0333.0287.85107forward
CNT30655381Cucumis sativusRosa chinensis39.7322.0689.83118forward
CNT30627899Cucumis sativusDaucus carota37.718.8394.64112forward
CNT30683192Cucumis sativusTriticum urartu36.0310.5689.72107forward
CNT3058324Cucumis sativusAmborella trichopoda36.0315.5185.98107forward
CNT30149760Cucumis sativusBrachypodium distachyon36.0324.8388.79107forward
CNT30577776Cucumis sativusOryza barthii22.228.8992.4266reverse complement
CNT30117690Cucumis sativusOryza nivara36.0333.3389.72107forward

Expression of CNT3049694

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAAMKAIINTEVKSCKDGFQCWLSSYRNDPIGFRFRVSLKLQSW*

Sequence

>CNT3049694
TTGGGTAACCATTCATCAACGAAAGCAGCTTCCCAAATGGGGTAAAAGTGCAAATCGATAGTTGCACAGGTAGGGATAATAACACCAGAAATAATATTGT
TTCCGTAAAGTAGAGATCCAGAATGGCAGCAATGAAGGCAATAATAAATACAGAAGTAAAATCTTGTAAAGACGGTTTTCAGTGTTGGTTATCTAGTTAC
AGAAACGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTTATTTAATAATTAATCATCAGGGACTCCCA