« Back to Digitaria exilis search


Detailed information on CNT30496898


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000078, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550233Digitaria exilisIpomoea triloba83.1453.3592.421504forward
CNT30507933Digitaria exilisNicotiana attenuata83.0873.9392.081503forward
CNT30163337Digitaria exilisPistacia vera75.7398.9990.581370forward
CNT30383474Digitaria exilisTriticum turgidum93.2610091.881687forward
CNT3018165Digitaria exilisZea mays51.6984.5494.76935forward
CNT30217525Digitaria exilisKalanchoe fedtschenkoi82.282.8988.371487forward
CNT30355986Digitaria exilisLactuca sativa77.6151.4388.821404forward
CNT30433935Digitaria exilisPapaver somniferum83.880.6891.951516forward
CNT30583181Digitaria exilisEchinochloa crusgalli75.9558.6294.471374forward
CNT30595404Digitaria exilisEragrostis curvula53.5799.7993.91969forward
CNT30558388Digitaria exilisPanicum hallii75.9598.9293.31374forward

Expression of CNT30496898

Peptides detected in this lncRNA

>peptide 1 (34 aa)
NGDVRKSGDAGEGLGKSYLFYLTACQPWKRFSQR*

>peptide 2 (34 aa)
MNGLTRFSLSLSTIQRNHSQGNGLSGISGERRPC*

>peptide 3 (33 aa)
MPRHLISDTHEWINEILTVPVYYPAKPQPRERA*

>peptide 4 (98 aa)
MEQCSQGKSAKRICNFGRRIGSEGWAQGSWPRNRRLPADCSSCSRGESGPPRGGRGTDRERFLRGHSPGVEQLNQNWYGQGKSDCLIKAKHCDGPFGC*

Sequence

>CNT30496898
CAACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGAGGGCCTCGGGAAGAGTTATCTTTTCTACTTAACGGCCTGCCAACCCTGGAAACGGTTCAGCCAG
AGGTAGGGTCCAGTGGTCGGAAGAGCACCGCACGTCGCGCGGTGTCTGGTGCGCCCCCGGTGGCCCTTGAAAATCTGGAGGACCGAGTACCCTCCACGCC
CGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAACCTCTGGCCAATGGAACAATGTAGCCAAGGGAAGTCGGCAAAACGGATCTGTAACTTCG
GGAGAAGAATTGGTTCTGAGGGTTGGGCTCAGGGTTCCTGGCCCCGAAACCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCCCGCGGTGAGAGCGGGCC
GCCGCGTGGCGGGCGGGGGACGGACCGGGAACGGTTTCTTCGGGGGCATTCCCCAGGCGTCGAACAACTGAATCAGAACTGGTACGGACAAGGGAAATCC
GACTGTTTAATTAAAGCAAAGCATTGCGATGGTCCCTTCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAAC
CAAGCACGGGTAAACGGCGGGAGTAACTATGACTCTATTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACACGCATGAATGGATTAACGAGATTCT
CACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTAGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCAAGTCCGA
CTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGCGCCTTCGGGCGCAAGTGAAATACCACTACTTTTAACATTATTTTACTTATTCCGTGAGTCAG
AAGCGGGGCATCACCCCTCTTTTTGGCTCCAAGGCCTGGCTCTGCCAGACCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCAC
ATCTATTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTTGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTTTGATTTCCA
GTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTTGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACATGGATAACTGGCTT
GTGGCAGGCAAGCGTTCATAGCGATGTTGCTTTTTGATCCTTCGATGTCCGCTCTTCCTATCATTGTGATGCAGGCAAGTGTTGGATTGTTCACCCACCA
ATAGGGAACGCGAGCTGGGTTTAGACCGTCATGAGATAGGTTAGTTTTACCCTACTGATGACCGTGCCGCAATAGTAATTCAACCTAGTACGAGAGGAAC
CGTTGATTCACACAATTGGTCATCACGCTTGGTTGAAAAGCCGGTGGCGCAAAGCTACCGTGTGTCGGATTATGACTGAATGCCTCTAAGTCAGAATCCA
AGCTAAAAACCGGCGCCTGTGCCCGCCGCTCGCCCCAACCCACATTAGGGCGTTTCGCCCCAAGGGCCCGCGCCACTGGCTCAGCCTGTCCGGCCGATGC
GCCGCGGCAGGCCGCCTTGAAGCTCCCTTCCTCACGGGCGGCGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGTAGAGT
GACCTTGCTGCCATGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTCCCTCCCCCCTCCACTTCCGCCGATGTATTCAGGCTCGAACGGAGAAT
AGGCTGACC