Detailed information on CNT30496834


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Digitaria exilisOryza sativa2.2436.7685.3375forward
CNT30520302Digitaria exilisSetaria italica3.0522.2287.25102forward
CNT30553147Digitaria exilisOryza glaberrima2.2423.2986.6775forward
CNT30349956Digitaria exilisEragrostis tef1.5520.0894.2352forward
CNT30595897Digitaria exilisOryza meridionalis1.7922.8191.6760forward
CNT30370879Digitaria exilisOryza glumipatula2.2432.4786.6775reverse complement
CNT30100813Digitaria exilisOryza rufipogon2.2120.3986.4974reverse complement
CNT30574707Digitaria exilisOryza barthii2.2425.258875reverse complement

Expression of CNT30496834

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLHDNIYLSVRDFFPSTCRSFSDYIISTCSRNAPLIL*

>peptide 2 (38 aa)
MDCGQRTYVTVQHAPRVCGLELTPLRFVFSSSVWSLLV*

>peptide 3 (35 aa)
MHMVVPISLSMFTEDRIIAILLIVGNWIWFFVVMR*

>peptide 4 (36 aa)
MCQAYWLIHGETVASEFPSIPYDAQYPNSSIAASRV*

>peptide 5 (29 aa)
MENKFIDTVILLICIFITKVLLFRSNARA*

>peptide 6 (33 aa)
MNRKMTRNALAHDLMRLIRILILTNCNFFQKPI*

>peptide 7 (96 aa)
HGLSMSSSSPCVPTTPRSPRPHAHADRITPPPILGIAAIDDAVVHEDVDHLTTLPASRRGARGHRRPHPHLPPKEAAAPSCTHPPHLLVVPPHEGQ*

>peptide 8 (43 aa)
MGKCCCQRGSLSIVALMLRKLKLWRGRPTRCSAMHAGTSNPRI*

>peptide 9 (40 aa)
MSYMNDTLVRLVGLNGVMLWFRDLAMIQFSFLIVHRKREA*

>peptide 10 (63 aa)
MRVWVRCVGMVRMMCGSCVDTVWHIRWHWTHGRAQEGDAPSLRLVDENVCLLGEVIVTLSHMA*

>peptide 11 (64 aa)
MCKQTWLEVAGHYNWFHSRPSLVSHACVGQMCGHGAHDVWVLCRHGMAHTLALDAWTCPRRGCS*

>peptide 12 (83 aa)
MRPHHAKKPPTTRPCRSDHATANPGNRRHRRCRRPRRRRSLDHVAGLSSRRSWPPPPSSTSPSERSCCSVMYAPTAPACCATP*

>peptide 13 (64 aa)
MKVSRSPYRRRLVVSRRPSPPRRGRHMLSWRDPLVAVLPDPLFTLPPIFLPPIKAAISRFLSPP*

>peptide 14 (50 aa)
TASVCHLAHHASPPRQEAPDHTPMPIGSRHRQSWESPPSTMPSSTKTSIT*

>peptide 15 (49 aa)
MQLGLVRLICLNWGPSAMSSSSSYYGLWPTNLCHRAACSASLWSGIDPS*

>peptide 16 (59 aa)
MMLKYSYASRFSVANNSFELRMCCHEVNSFSCVYESISLTNTWHLCFQEKGLHNGKQIY*

>peptide 17 (58 aa)
MAFCFLNRRSRSWCRDRNSNGEVLLSAWKSLHRCTDAAEAEALARKAYALQRNARRNQ*

Sequence

>CNT30496834
CCACGGCCTCAGTATGTCATCTAGCTCACCATGCGTCCCCACCACGCCAAGAAGCCCCCGACCACACGCCCATGCCGATCGGATCACGCCACCGCCAATC
CTGGGAATCGCCGCCATCGACGATGCCGTCGTCCACGAAGACGTCGATCACTTGACCACGTTGCCGGCCTCTCGTCGAGGCGCTCGTGGCCACCGCCGCC
CTCATCCACATCTCCCTCCGAAAGAAGCTGCTGCTCCGTCATGTACGCACCCACCGCACCTGCTTGTTGTGCCACCCCATGAAGGTCAGTAGGTCACCAT
ACCGTCGCCGCCTGGTGGTGAGCAGAAGGCCGTCTCCCCCGAGGCGGGGGAGGCACATGTTGTCATGGAGAGATCCACTGGTCGCCGTCCTCCCTGATCC
GCTTTTCACTCTGCCCCCAATCTTTCTCCCCCCGATCAAGGCTGCCATATCTAGATTTCTGTCTCCCCCCTGATCCAACTAGGCTGCCATTGCTAGATTT
GCTTGACGGATTGGGCAGGGTACGGATTGGTGTGGCAGAAGCCGATGCAGCTGGGGCTGGTGCGGCTGATCTGCCTGAACTGGGGTCCCTCTGCGATGTC
CTCTTCATCTTCTTATTATGGATTGTGGCCAACGAACCTATGTCACCGTGCAGCATGCTCCGCGAGTCTGTGGTCTGGAATTGACCCCTCTTAGGTTCGT
TTTCTCCAGCTCAGTTTGGTCATTATTGGTTTGATTTGCTCCATCTGCTTCAGTGCCAAGATATGTTCACCCTGCTTTGGTCAACTGACGTCGGTTCTGT
TATTTGTGCAATCAATTTGTTATGATTAAAATCCTTCACTGGATTCAGATTATTTATGTGCCAAGCATATTGGCTGATCCATGGTGAGACAGTTGCAAGT
GAATTCCCTTCCATTCCATATGATGCCCAGTATCCTAATTCATCTATAGCTGCAAGCCGTGTGTGATGCACATGGTTGTTCCCATAAGCTTGTCAATGTT
TACAGAAGATAGAATTATTGCAATCTTATTGATTGTAGGAAACTGGATTTGGTTTTTTGTTGTGATGAGGTAGTGAAGACAATCGCTTTTTTATTTCACT
TTGTCTTGATAGTGCTAATATGTTGGAGTGGTAAATTTTTTTTGACATATCCATGGCGTAAGCGCAATATGTCCTATATGAATGACACTCTGGTCAGGCT
TGTTGGGCTGAATGGGGTGATGTTGTGGTTCAGAGATTTAGCCATGATCCAGTTTTCATTCTTGATAGTGCATCGCAAAAGAGAAGCATAGAAGGGCCAG
AGGTGATTCAAGGCTTGCTGGAGCTATAGCCATTTATTGAGAAGCCCTATGTCATTGACATTGTCGGACGACTGTATTAGATTGGCATATCAGATAGTCA
CAAATAAAAGATTGGCACTGACAGCTACCTGTTGATGCAGGAGAAGGTTTCAGATACAGGATAACATGGCACAATGTTACATGATAACATTTACTTGTCC
GTTAGAGATTTTTTTCCTTCAACTTGCCGTAGCTTTTCTGATTATATAATCAGCACTTGTTCACGAAATGCTCCTCTGATTCTATGATGCTTAAGTATAG
TTATGCTTCCAGGTTCAGTGTCGCAAACAATTCTTTTGAGCTAAGAATGTGCTGTCATGAAGTGAATTCTTTTTCATGTGTCTATGAATCTATCAGTCTG
ACTAACACTTGGCACTTGTGCTTCCAGGAAAAGGGCTTGCACAATGGAAAACAAATTTATTGATACTGTTATTTTATTGATCTGTATATTCATCACAAAG
GTTTTGCTGTTTCGTAGCAACGCACGGGCATAATACTAGTAAGTTGTTAAACTTTTAACAACTTGTTAAAGTTTAACAAGGGGATCCAAACAGGGCCTTA
GATAAGACAGAGGATAGCAGAACAATAAGTCCTTGTGGCCAATCCGACAAGGCAAAGATCAGCTGGATTACAAGGGCAAAAGCCCCTGTTGCCCCCCTGA
CAGATAAAGGAAGGAGAGGACGGAGGCGCCCAAAAAAGTGCAGGAAATTTGGGAGAAACCTCCAATGGGATGGGTGAAAGCTGTCGATGGCTTTTTGTTT
CCTAAACAGAAGAAGCAGGTCTTGGTGTCGTGATAGGAATAGCAATGGGGAAGTGTTGCTGTCAGCGTGGAAGTCTCTCCATCGTTGCACTGATGCTGCG
GAAGCTGAAGCTTTGGCGCGGAAGGCCTACGCGTTGCAGCGCAATGCACGCAGGAACCAGTAATCCTCGAATCTGACTGCTTCTGGGTGGAATATTTCTT
TAGAGATTGGAAATAGAGGTCAACGAGTGTGGATAGCCTTAGAATGGGGGTGACATATCAGCTTCATAGCAGCGGAGGCGATCGAGCTAACGCAATTGCT
TAGGGATCGGAGGATAGTTCAGGTAAAGAGAGCGCGGAATTTATTCGCAAATGAGTGAGTACATTTTGCACAGGTAAAGAGAGCGCGGAATTTATTCGCA
AATGAGTGACTACATTTTGCGAGAAGGACTGCGTAGTCTGCGGTTTGGTTAGGGTCAGCGCTGCGTGCGTGGAGTCCCTAATCACGAATGATTGTGACTT
CTCTGTTTAATTAACAAAGCTCTCTTTTACCCCAAAAAAATAAGACTGCCTCTTCGGCTTGGTACACGAAGGCAAACTCAAATATGAGTACGTTATGTCA
TTTTACTCGTATGGGATTGTTGTAGATCTTTTTTGCATGCTCTTTCACCTAGAGGAAGCATGAATAGGAAAATGACGCGTAACGCCCTTGCTCATGATTT
AATGCGATTGATAAGAATACTTATACTAACAAATTGTAACTTTTTTCAGAAGCCCATTTGAAAGAACTCCGAGGTTAAGCGTGCTTCCTCTGGAGCAATG
GGTGAATGACCGTGAAGTTCTTCCTGCATGCGCACGAGTGAGGACAAAGTGCGTAGAAAAGACATGTGTTGGCTTGCGAGGGAAATCTTGAGGTCCTAGA
GACCTGACATGTGTAAGCAAACCTGGCTCGAGGTGGCGGGACATTACAATTGGTTTCATAGCCGACCCTCGTTGGTTTCACATGCGTGTGTGGGTCAGAT
GTGTGGGCATGGTGCGCATGATGTGTGGGTCCTGTGTAGACACGGTATGGCACATACGCTGGCACTGGACGCATGGACGTGCCCAAGAAGGGGATGCTCC
TAGCTTAAGATTGGTTGACGAGAACGTTTGTCTTCTAGGGGAGGTGATTGTAACACTCTCGCATATGGCTTAATAGGATTGATAAGAATACTCATACCAA
CAAGTTGCAACTTCTTTTTCAGAAGCCCATTTGAAGAACTCCGAC