« Back to Digitaria exilis search


Detailed information on CNT30496833


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Digitaria exilisSetaria viridis80.8383.8692.62894forward
CNT30173274Digitaria exilisTrifolium pratense76.2262.6887.07843forward
CNT30146334Digitaria exilisMedicago truncatula56.9663.3887.3630forward
CNT30368495Digitaria exilisSorghum bicolor66.9172.6292.3740forward

Expression of CNT30496833

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRLRSFTATFFTLKPTLSPGRASWRASWCISTDFTSVVRPVGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30496833
CAATCACGAGTACTAGCATTCAGCAAGCCGATAGGGGCACTATTCAGACTCAGGTAATTTAAGTTTTGCCAAATCCAAAATATTAAAACTGTATGTAAAC
GATAAACAGACTGATGGCACATTGCCAGCTGAGATAGATAGTTCACAACGTAACAGCAATGGCCTTGGACAAAACTTAAAAGAAATTAAAGCATCCAGAT
ATCCCAAAAGCAGATCCGGAATCAACCACCAGGCACATCATTTCTTCTTGGCCGCAGCCTTGGTGACCTTGGCACCAGTTGGGTCCTTCTTCTCCACACT
CTTGATGACTCCGACAGCAACAGTTTGCCTCATGTCACGGACAGCGAAACGACCAAGAGGAGGGTACTCGGAGAAGGTCTCCACCACCATGGGCTTGGTG
GGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGATCGTCTGTCTATCTTGGTAACCAGCTCAG
CAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCAATCTGTCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAA
GCTGGCAGCCTCCTTAGCAGGGTCATCTTTGGAGTTGGAAGCCACATACCCACGCTTGAGATCCTTCACGGCAACGTTCTTCACATTGAAGCCAACGTTG
TCGCCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGACCAGTTGGCCCAAAGGTGACAACCATACCAGGCT
TGATGATACCGGTCTCAACACGGCCAACAGGGACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAGGGTCT
CTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCGCCCTCAAAACCA
GAGATGGGCACGAAGGCAATCTTGTCAGGGTTGTAGCCAACCTTCTTGAGGTACGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACT
TGGGAG