« Back to Digitaria exilis search


Detailed information on CNT30496729


BLAST search results

BLAST vs Swiss-Prot:
sp|A1EA07|PSAB_AGRST, E-value = 0.0

BLAST vs NONCODE:
NONOSAT000261, E-value = 2e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202037Digitaria exilisPisum sativum98.3330.7387.31000forward
CNT30289362Digitaria exilisTriticum aestivum6558.796.67661forward
CNT30219816Digitaria exilisHordeum vulgare78.8640.2495.26802forward
CNT30560220Digitaria exilisActinidia chinensis21.7314.2192.31221forward
CNT3059930Digitaria exilisArabidopsis lyrata26.4580.7889.59269forward
CNT301761Digitaria exilisZea mays62.9311.2998.12640forward
CNT30683954Digitaria exilisTriticum urartu99.836.3396.261015forward
CNT30366947Digitaria exilisSorghum bicolor35.6925.4297.52363forward
CNT30152144Digitaria exilisPrunus persica18.8890.1489.06192forward
CNT30430934Digitaria exilisPapaver somniferum98.1315.2890.48998forward
CNT3057356Digitaria exilisAmborella trichopoda97.8441.3586.93995forward
CNT30147977Digitaria exilisBrachypodium distachyon61.6551.1895.69627forward
CNT30585620Digitaria exilisEchinochloa crusgalli100.119.8498.431018forward

Expression of CNT30496729

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSYHEQIVSIGQIWVRSRFAFLEYQKQA*

>peptide 2 (29 aa)
RKENYTRNPFYPALIWNRVHLKHPLLKSM*

>peptide 3 (33 aa)
MSRLYPLGKYGFDQDLLFWSTKSKHDVVMNIKA*

>peptide 4 (39 aa)
SQGKLYPKSFLSGINLEPRASKAPFTKINVVVCKPRAIA*

Sequence

>CNT30496729
TCGCAAGGAAAACTATACCCGAAATCCTTTTTATCCGGCATTAATTTGGAACCGCGTGCATCTAAAGCACCCTTTACTAAAATCAATGTAGTTGTATGCA
AACCTAGAGCAATAGCATGATGAACCAAGAAATCTCCGGGTCCTATTGTTAAGAAAAGCGAATTACTATTCTCATTAACAGCATTCAACCATCCGGGCAA
CCATATGCTTCGACCTGCATTGAAAGCGGGGCCATTCGTTGAAGATAAGAGTATATCGAACCCATATGTCGTCTTACCATGAGCAGATTGTATCCATTGG
GCAAATATGGGTTCGATCAAGATTTGCTTTTCTGGAGTACCAAAAGCAAGCATGACGTCGTTATGAACATAAAGGCCTAAGGTATGGAATCCTAGGAAGA
GGCTAGCCCAACTTAAATGAGATATGATAGCTTCTTTATGGTCTAACATTCTTGCCAATACATTATCTTCATTCTGTTCCGGATTGTAATCCATAATGAA
AAAAATAGCTCCATGAGCAAAAGCCCCTGTCATGATGAACCCCGCAATGTATTGGTGATGAGTATATAAAGCAGCTTGAGTAGTAAATCTTGTGCTATGA
ATGCATAAGCAGGTAAAGAGTACATATGTTGAGCTACTAAGGAAGTAATAACCCCTAAGGAAGCTAGAGCAAGACCTAATTGAAAATGAATCGAATTATT
AATTGTATCATAAAGGCCTTTATGCCCACGTCCTAATCGACCCCCCGGAGGAGTATGCGCTTCTAAAAGATCTTTGATACTGTGCCCAATTCCGAAGTTA
GTTCGATACATATGACCGGCAATGAGAAAAATAAATGCAATAGCTAAATGATGATGAGCAATATCGGTCAGCCACAAACTTTGTGTTTGTGGATGGAATC
CCCCAAGAAGGGTTAGAATGGCAGTTCCCGCTCCTTGAGTGGTACCAAATAAATGATTACTCGAATCAGGGTTTTTTGCATAAAGATTCCACTGACCCGT
CAGAAGGGGACCCAACC