« Back to Cucumis sativus search


Detailed information on CNT3049671


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020344Cucumis sativusCitrullus lanatus29.019.7386.29197reverse complement

Expression of CNT3049671

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IEINMYYKFNGFSHDRKKKKRMRRRRRRRRREENKEK*

Sequence

>CNT3049671
TATAGAAATAAATATGTATTATAAATTTAATGGTTTCAGCCACGATAGAAAAAAGAAAAAGAGGATGAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAG
AATAAGGAAAAGTGAGTTATTTTATTTTATTATTAGATACTTTTGTTCATATATAATTATGTAGTGATGAAGGAAGGAAGGGAGGGAGGGGAAGGGTATA
GATGAAATTAAGGGCAGGGGGTGGGATTGATTGAGATATAAGAGAAGAAAATTGATATTTATATAAGAAATCAAAAGGCATAAGTTTTAGAAGAGGGAGA
GTCAGCAAATTTCAAGGACTGTTGGATGAGCTTCTGGGCTTTTCTGCTTCTGATTTCAACTCTCATGCTTTCACTTTTCTCCATCTTATCATAATCTGCA
TCGTAATTTGTTGCTTTCATCTTCATCTTCATCTTCAATGACTTCATTATTTTTGCTTTCAAGTTCACTACTACCCTCAACATCATCCTTACCTTACCTT
TTTCCCTTCACACAATAACCTAACCTGCAAAATTTCACAACAAAAATGGCAAAAGAAGAGAGAGAGAGAGAGTGTGTGTGTTTGGAGAGAGAGAAGAATA
GTTGAGAATGAAAATAAATAAATAAAATTGTGGGGTTGCTTTTGGTGTGGTCACAATGTAACCATAAAGGATATTAGAT