Detailed information on CNT30496705


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697760Digitaria exilisOryza sativa15.8921.4893.158forward
CNT30450733Digitaria exilisSaccharum spontaneum17.8123.2193.8565forward
CNT304738Digitaria exilisZea mays18.0825.1987.8866forward
CNT30557192Digitaria exilisPanicum hallii24.6621.2397.7890forward

Expression of CNT30496705

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MMITRVTVVAQDNLATRAPPLSSSSSHRSCRSRRRRRRGC

>peptide 2 (39 aa)
MGSRSGSKQHRRLDEQVCDQKHRLATTWNRKETQVGDDD*

>peptide 3 (32 aa)
MEQKGNTGRRRRLTNTRRHRDDDNSGNSSSTR*

Sequence

>CNT30496705
GCAGCACCAAGTAGCACTTCTTTTCATCTGATTTAGCTTCAAACGGACGGTAACAAGTTGCACGCGGGTAACAGCATCCAACCAATCTCAGCACCCCATT
TCTATGGGATCGAGATCAGGATCGAAACAACACAGACGACTCGACGAACAAGTTTGCGATCAAAAACACAGATTGGCAACAACATGGAACAGAAAGGAAA
CACAGGTAGGAGACGACGACTGACGAACACTAGACGACACAGGGATGATGATAACTCGGGTAACAGTAGTAGCACAAGATAACTTGGCCACGCGGGCCCC
ACCGCTCAGCTCCTCCAGTTCCCATCGGAGTTGCCGTAGCCGCCGCCGCCGCCGCCGCGGCTGCC