« Back to Digitaria exilis search


Detailed information on CNT30496612


BLAST search results

BLAST vs Swiss-Prot:
sp|P48976|CALM_MALDO, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30216184Digitaria exilisKalanchoe fedtschenkoi20.9429.2286.62142forward

Expression of CNT30496612

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTTPNPTTTRHYHLHDTDTYSNGHGKVQLVSLIIQFASDRLISWGPFLT*

>peptide 2 (63 aa)
MTWRSSAAEMKPFWSLSKTRKERRKGVLVLASLVGWPAMMGNGVAGPWADFIAVRRARGRIPFQ

Sequence

>CNT30496612
GATTGACAATGCGATAGAAAAACAAGCCAAGAAACTGCATCCCCCAGATAACAATTAGCATTAGCAGAAACCCAGACTGATTGACAATGCGATAGAAGAC
TTGTGCAAATACCAACATCCACAAAAATATGAACTTCAACAAATCCTAAAAGCTCCAACAGGCGCATAATGCAAGATAAACATCACAATCAAAAGAAACC
AGGTATCTGATGTCACGTTCCCATGACTACACCTAACCCGACCACTACTCGACATTACCACCTGCATGATACTGATACGTACTCAAATGGACATGGCAAA
GTACAGCTTGTGAGCCTGATAATTCAGTTTGCTTCGGACAGACTTATTTCATGGGGACCGTTCCTCACTTAGCCATCATGACCTTGACGAACTCTTCGTA
GTTGATCTGGCCATCGCCGTCAACGTCTGCCTCGCGGATCATCTCATCGACTTCCTCATCGGTCAGCTTCTCACCGAGGTTGGTCATGACATGGCGGAGC
TCAGCGGCTGAGATGAAACCGTTCTGGTCCTTATCGAAGACGCGGAAGGAGAGAAGGAAGGGGGTGCTCGTGCTCGCGTCACTCGTTGGTTGGCCTGCGA
TGATGGGGAACGGGGTGGCCGGTCCGTGGGCCGATTTTATAGCGGTGAGGAGAGCGAGGGGGAGGATTCCATTCCAAG