Detailed information on CNT30496573


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Digitaria exilisOryza sativa2514.295.59136forward
CNT3011150Digitaria exilisZea mays49.8232.0385.98271forward
CNT30338878Digitaria exilisEragrostis tef50.5535.2686.55275forward
CNT30367799Digitaria exilisSorghum bicolor45.437.9487.85247forward
CNT30370255Digitaria exilisOryza glumipatula2521.3595.59136forward
CNT30101773Digitaria exilisOryza rufipogon2516.595.59136forward
CNT30116717Digitaria exilisOryza nivara2516.5595.59136forward
CNT30604129Digitaria exilisOryza punctata2521.6992.65136forward

Expression of CNT30496573

Peptides detected in this lncRNA

>peptide 1 (76 aa)
REFVSLYISICIIDRSRREPGVGCRAMARRSRRGPTARWCCRCPRGRSRRSCRRTWPPRRREACVWRSGRRRGATA*

>peptide 2 (49 aa)
MYVHKLNSVDRAKGLRLVWEGAASHGSEMDEAHREGAMWPALDRLILIS*

>peptide 3 (28 aa)
MARRWTRPIGRVPCGLLWIGLSSSPDSAA

Sequence

>CNT30496573
GCGAGAATTTGTAAGTTTGTATATCAGTATATGTATCATCGATCGAAGCCGTCGTGAACCTGGAGTGGGTTGTAGGGCGATGGCGCGTCGGAGCCGTAGA
GGTCCCACTGCCCGGTGGTGTTGCCGATGTCCTCGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGCGAGGCCTGCGTGTGGA
GGAGCGGCAGGCGGCGCGGGGCGACGGCCTGACGACGGCGAGCCTCCTGCCGGAGATGGAGCTGCCGGCGAGGCCCTTCACGGCGACCGGCTGCACGGAG
ACGGCGGCGAGGGAGGCCATGGCGGTTGGCGCGCGATGACTAGTGACGAGGTTACTACACAGATAGTAGAGTGTTGCAGTGCGTATGTATGTGCACAAAC
TTAATTCGGTGGATCGTGCTAAGGGTCTGAGACTTGTGTGGGAGGGGGCAGCTTCGCATGGCTCGGAGATGGACGAGGCCCATAGGGAGGGTGCCATGTG
GCCTGCTCTGGATAGGCTTATCCTCATCTCCTGATTCTGCTGCG