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Detailed information on CNT30496422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Digitaria exilisOryza sativa36.9527.1188.6228forward
CNT30672063Digitaria exilisSetaria viridis36.9544.1994.74228forward
CNT30520246Digitaria exilisSetaria italica34.6822.7789.25214forward
CNT30180108Digitaria exilisSecale cereale33.0693.1589.22204forward
CNT30289434Digitaria exilisTriticum aestivum36.9539.3890.35228forward
CNT30221546Digitaria exilisHordeum vulgare33.2389.9188.29205forward
CNT30392320Digitaria exilisTriticum turgidum28.858987.08178forward
CNT30554471Digitaria exilisOryza glaberrima36.9541.3888.6228forward
CNT30436341Digitaria exilisAegilops tauschii29.1759.2189.44180forward
CNT30251924Digitaria exilisAvena sativa36.9541.9191.23228forward
CNT30658643Digitaria exilisTriticum dicoccoides36.9551.4785.96228forward
CNT30450022Digitaria exilisSaccharum spontaneum36.9522.0593.42228forward
CNT30681546Digitaria exilisTriticum urartu33.2393.6191.22205forward
CNT30721558Digitaria exilisTriticum spelta30.3183.4887.7187forward
CNT30340854Digitaria exilisEragrostis tef23.0162.2896.48142forward
CNT30361377Digitaria exilisSorghum bicolor34.5218.9288.73213forward
CNT30596591Digitaria exilisOryza meridionalis37.2848.8388.26230forward
CNT30370727Digitaria exilisOryza glumipatula32.7438.6291.58202forward
CNT30104991Digitaria exilisOryza longistaminata34.6890.385.05214forward
CNT30148227Digitaria exilisBrachypodium distachyon26.7465.4887.88165forward
CNT30102628Digitaria exilisOryza rufipogon36.9517.9788.6228forward
CNT30577068Digitaria exilisOryza barthii35.4946.990.41219forward
CNT30117165Digitaria exilisOryza nivara36.9550.8988.6228forward
CNT30593977Digitaria exilisEragrostis curvula30.4784.6886.7188forward
CNT30604388Digitaria exilisOryza punctata25.6147.5991.77158forward
CNT30556802Digitaria exilisPanicum hallii37.2826.0295.22230forward
CNT30551356Digitaria exilisOryza brachyantha25.4545.3891.72157forward

Expression of CNT30496422

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MDGSVVWLDLPALVVSLAPFPEDDLGAVADAAVPLVAVERVEVEVDVVDHAHAAEAVADVAALSPQHGLVHVVRVVGHQTDLQSRYRIIHGAVG

>peptide 2 (45 aa)
LSPSKLIRILSVVYVYLNFTAQYTGCILYCCCSSSHRDIQLQRIQ*

>peptide 3 (32 aa)
MQKKQETADTAGQAGSILILAYSSTMHFEVVR*

>peptide 4 (37 aa)
MAGSSSAGCLPRTISRGRSRCRRGRRRATCRRGARRS*

>peptide 5 (31 aa)
EPIKINQNSFGSIRVSEFHSPIHRMYTLLLL*

Sequence

>CNT30496422
CTGAGCCCATCAAAATTAATCAGAATTCTTTCGGTAGTATACGTGTATCTGAATTTCACAGCCCAATACACCGGATGTATACTTTATTGTTGTTGTAGTA
GTAGTCATAGAGATATACAGCTGCAGCGTATACAGTGACCCTCCGATCCACACACAAGTAACCGCCTGTTCCTGCTTTATCTATGTATTATTATGCAGAA
GAAGCAAGAGACAGCAGACACGGCAGGACAAGCAGGCTCAATTCTTATTCTAGCATATAGTAGTACCATGCATTTTGAGGTGGTGAGGTGATATATGCTG
AGGACGACGATGCTCCAGCGGTGGTGCAGTAGTAGATGGATGGATCAGTAGTATGGCTGGATCTTCCAGCGCTGGTTGTCTCCCTCGCACCATTTCCAGA
GGACGATCTCGGTGCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGCGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGCACGCAGCGGAA
GCCGTGGCCGACGTCGCGGCTCTCAGTCCACAGCACGGACTCGTCCACGTAGTCAGGGTTGTAGGGCACCAGACGGACCTGCAGTCAAGATATAGGATTA
TTCATGGAGCAGTTGGC