« Back to Digitaria exilis search


Detailed information on CNT30496126


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-51

BLAST vs NONCODE:
NONGMAT001327, E-value = 9e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Digitaria exilisOryza sativa31.7647.8992.13216forward
CNT30671259Digitaria exilisSetaria viridis37.3562.194.88254forward
CNT30523218Digitaria exilisSetaria italica45.4456.5993.85309forward
CNT30317753Digitaria exilisCorylus avellana42.6541.6782.76290forward
CNT30549690Digitaria exilisIpomoea triloba27.3544.2983.87186forward
CNT30703567Digitaria exilisQuercus lobata35.5947.9281.82242forward
CNT30375418Digitaria exilisArabidopsis thaliana11.7633.986.2580forward
CNT30617135Digitaria exilisSesamum indicum45.5930.9184.19310forward
CNT3069055Digitaria exilisQuercus suber12.7927.886.2187forward
CNT30196946Digitaria exilisPisum sativum21.0319.9780.42143forward
CNT30712284Digitaria exilisGlycine max23.6834.2681.99161forward
CNT3042757Digitaria exilisPrunus dulcis38.3843.0784.67261forward
CNT30178072Digitaria exilisSecale cereale48.3860.792.71329forward
CNT30285178Digitaria exilisTriticum aestivum46.1866.2494.27314forward
CNT30221015Digitaria exilisHordeum vulgare36.1846.6895.53246forward
CNT30386576Digitaria exilisTriticum turgidum46.7654.2794.34318forward
CNT30565712Digitaria exilisActinidia chinensis20.5946.8288.57140forward
CNT3086297Digitaria exilisVigna radiata41.7624.4282.04284forward
CNT30553196Digitaria exilisOryza glaberrima31.7638.7193.52216forward
CNT30441099Digitaria exilisAegilops tauschii46.6261.4393.69317forward
CNT30244338Digitaria exilisAvena sativa46.7657.394.03318forward
CNT30664208Digitaria exilisTriticum dicoccoides46.3262.6293.65315forward
CNT3059678Digitaria exilisArabidopsis lyrata23.6833.4785.71161forward
CNT3082467Digitaria exilisBrassica juncea39.1237.181.58266forward
CNT30261175Digitaria exilisBrassica rapa28.0940.4779.58191forward
CNT30611328Digitaria exilisArabis alpina13.5320.1882.6192forward
CNT30450127Digitaria exilisSaccharum spontaneum47.7948.6594.77325forward
CNT30135649Digitaria exilisLolium perenne47.6563.1693.52324forward
CNT304209Digitaria exilisZea mays32.537.9794.57221forward
CNT30229571Digitaria exilisAnanas comosus21.1834.9588.89144forward
CNT30679384Digitaria exilisTriticum urartu46.1851.8293.63314forward
CNT30720165Digitaria exilisTriticum spelta20.7430.0690.07141forward
CNT30348363Digitaria exilisEragrostis tef45.5955.6694.84310forward
CNT30619612Digitaria exilisCajanus cajan21.4734.8481.51146forward
CNT30596905Digitaria exilisOryza meridionalis33.3837.3492.51227forward
CNT30357929Digitaria exilisLactuca sativa42.2164.0680.84287forward
CNT30370989Digitaria exilisOryza glumipatula4548.9692.16306forward
CNT30645456Digitaria exilisCannabis sativa28.5325.2985.05194forward
CNT3024855Digitaria exilisPopulus trichocarpa19.852382.22135forward
CNT30325970Digitaria exilisAsparagus officinalis40.8840.2983.45278forward
CNT30331117Digitaria exilisDioscorea rotundata43.9731.5778.26299forward
CNT30147953Digitaria exilisBrachypodium distachyon45.5935.6790.97310forward
CNT30101647Digitaria exilisOryza rufipogon44.4132.494.7302forward
CNT30577582Digitaria exilisOryza barthii33.3835.6992.07227forward
CNT30581397Digitaria exilisEchinochloa crusgalli33.3838.6792.95227forward
CNT30117618Digitaria exilisOryza nivara31.764893.98216forward

Expression of CNT30496126

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSPEMRFTPPLLASLRIAGLVMPWMLSRSTFRWRLAPPLPRPLPPLPRPDIAAAGGRCEHEGIWGDFWCG*

>peptide 2 (30 aa)
SQIIKITSRSSSSPTIATGFLTRFNSSTRR*

Sequence

>CNT30496126
TCCCAAATAATCAAGATTACTAGCCGCAGCAGTTCGTCACCAACAATTGCAACAGGGTTTCTGACACGGTTTAATTCTTCAACAAGAAGATAGCACTAGC
ATTTCTTTCAGCTGCAAAGGATTAAATTACATCTGGAAGCGCACCAACTCTCATAACTGGGATAACACAGCTAAGATTAGAACCACCACAAAGCAAGCAG
GCCAGATAGACTGAGAGCGAAGCACCACTAATCACAAAAGGCGTCCATGACTCCAATCCCACGAACACCGCGGGGACGACACGAGGGGCGGCGAGCCTAG
CCGCCAAAGCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACAACATCCATGGCGGTGACGGTCTTGCGCCTGGCGTGCTCGGTGTAGGTGACGG
CGTCTCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTGGCGAGCCT
CCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGGCGCTTGGCGCCACCCTTGCCCAGACCCTTGCCGCCCTTGCCGCGC
CCCGACATCGCCGCCGCCGGTGGGAGGTGTGAACACGAAGGAATTTGGGGGGATTTTTGGTGTGGGTAGAGAGGGTGCTG