Detailed information on CNT30496055


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519965Digitaria exilisSetaria italica27.8655.8488.4526forward
CNT30150498Digitaria exilisBrachypodium distachyon4.2928.4288.8981forward

Expression of CNT30496055

Peptides detected in this lncRNA

>peptide 1 (98 aa)
LQKKSKTCDTLNKCEVCWCIYCTIITIFFLKKKNIAYMKFRLTNIRQRHRSSSSQWRICLPRPILVMVVYLMEMLHAIKASDSYQCCIGKRKKYMQPN*

>peptide 2 (38 aa)
MVPPECEFSQLPVPQISNIVPVHPILSMSIWKTSQLEE*

>peptide 3 (38 aa)
MRILTATSTSDFQHSSCASYTFHVNMENKSIRRVNQIL*

>peptide 4 (85 aa)
MATVDCLQKQCYSTEYSSTAPNTVPTIKRLFHRVLSSLHTKLKNTTQVSCVASAAKQRQAGGRVRRLLTRSCSDLVHNPTMSQCR*

>peptide 5 (52 aa)
MKTELLGGTSNSWALENQVKLVAYFPYGWYLLEPRAPELPPPAPPTPPAPPP*

>peptide 6 (50 aa)
MLYRQKEKIYAAELVCTSGRSMQIGKDKTMQSAIGWNLRPNGTIQPRTGK*

>peptide 7 (48 aa)
MLLWFSLLYFNLKTKNSTKVNSITTNHLKLQSTVNNLKFMGTQKTKNR*

Sequence

>CNT30496055
CTGCAAAAGAAAAGTAAAACATGTGACACCCTGAACAAATGTGAGGTCTGCTGGTGCATTTACTGTACAATAATAACCATTTTTTTTTTAAAAAAAAAGA
ACATTGCCTATATGAAATTTAGATTGACTAATATTAGGCAGAGACATAGATCGAGCTCTTCGCAATGGAGGATTTGCCTTCCGCGGCCAATCCTGGTGAT
GGTTGTTTACTTGATGGAAATGTTACATGCTATTAAAGCATCGGACTCCTACCAATGCTGTATAGGCAAAAGGAAAAAATATATGCAGCCGAACTAGTGT
GTACATCTGGGAGATCGATGCAAATTGGCAAGGATAAAACCATGCAGTCAGCAATAGGCTGGAATCTTAGGCCCAACGGAACCATTCAACCGAGGACAGG
GAAATGAGCCCACCAATGCCACCACAAAGGGTAGGTTTCGGACAATAGACCCAATGGTTCCACCAGAATGCGAATTCTCACAGCTACCAGTACCTCAGAT
TTCCAACATAGTTCCTGTGCATCCTATACTTTCCATGTCAATATGGAAAACAAGTCAATTAGAAGAGTAAACCAAATCCTTTAATGGGTTCCTAATTATA
ATCACCACAGATGGCAACAGTTGACTGCTTGCAAAAGCAATGTTACAGCACAGAATATAGTTCTACCGCACCAAATACTGTTCCTACCATAAAACGCTTG
TTTCACAGGGTTCTAAGCTCTCTGCATACCAAACTAAAGAATACAACACAGGTTTCATGTGTAGCTTCTGCAGCAAAACAAAGGCAGGCAGGCGGGCGGG
TTCGACGACTGCTTACACGTTCTTGTAGCGACTTAGTTCACAACCCAACAATGTCTCAATGCCGCTGATTAGGTGTGACCTCGCATGAAAACTGAACTTC
TAGGAGGCACAAGTAACTCCTGGGCCCTAGAAAACCAGGTTAAACTTGTCGCTTATTTTCCATACGGATGGTACCTGCTAGAACCCCGAGCACCTGAGCT
CCCACCACCAGCACCACCTACTCCACCAGCTCCTCCCCCATAACCGCCATATCCACCTGCACCATAGCCACCTGGGGCACCACCATAGGCGCCGCCACCA
TATGCACCGCCTCCGTAGGCACCCCCTCCGTAGGCACCACCACCATAGGCGCCATATGCACCGTAAGCTCCTCCATACATAGAGCCACCATATCCACCAC
CAAAACCAGACCCAAATCCAGCATTGCCTCCATAGCCATACCCTCTACCGTAGCCATATCCTGCTCCTGCGCCACCGTCATATCCATAACCTGCCGCTGC
AGATCTATAAGCACCACCGTACCCATACCCACCACCACCACTGCCAGCACCACCACTGTTGCCACCGCTGCCGCTGCCAGCTCCACCACTGCGGTAAGAA
CTACGGTACCCACCACCCCCGTGGCTAGATCTACCATTACTGCTGTGATCAGATCCATGCTTCTTTGGTTCAGCCTTCTTTATTTCAACCTGAAAACAAA
AAATAGTACAAAAGTAAATAGCATCACTACAAATCACCTCAAACTTCAAAGTACAGTAAATAATCTTAAGTTTATGGGTACACAAAAAACAAAGAATAGA
TAATCCATTGCTCAAATAGGAACTACAGAACACAAAAGGAACAAAGCCTTATAGTCCCAAGTTGGGATAAGGCTCAGCACCATTCAGAATCCTAAGCAGA
CGATTGCAAATTAGCTGCTATAATGCTCTGGAATTTCAATAGTCCTTTTTGTAGCATATGAACATGAACCTATTTGGTTTTAATTCCTTTTTATTTTCTT
AGTAAAGCATTGTTGAAGAGAAAGAACGAGACCGGTGCAACAACAGCTACTATAATTGCTACCACTGCAGAGTTACAACAAAACACAA