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Detailed information on CNT30496006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678294Digitaria exilisSetaria viridis17.1321.7799.19123forward
CNT3018187Digitaria exilisZea mays17.1333.9897.56123forward
CNT30230544Digitaria exilisAnanas comosus16.7124.7494.17120reverse complement

Expression of CNT30496006

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDMRTYLGCSHAGYRMTKVMRRRNPCLVTSTLLRAKNESLIFLAF*

>peptide 2 (39 aa)
MGKISLQAVHTTFIEYGFPRCAHGIVVRGLSMFIGTLMA*

>peptide 3 (74 aa)
RCSRVGQISPSLPQARPQEAFQQTARFFTALEVNHFVSMAAVVKAGVPPPVSATTCRPVGAAERRVLRRRASFC*

>peptide 4 (57 aa)
MKMNSINLICIYYMGFSWEVLHTHLALTLSTNVAAPAPVTCKNPRSYVYAPICWSFV*

Sequence

>CNT30496006
GCGATGCAGCAGAGTAGGTCAAATTAGCCCCTCGCTCCCACAGGCAAGACCGCAGGAGGCATTCCAGCAAACTGCTCGCTTCTTCACCGCTCTGGAGGTC
AACCACTTTGTGTCCATGGCTGCCGTGGTGAAGGCTGGTGTGCCTCCGCCGGTCAGCGCCACCACCTGCCGGCCGGTCGGCGCCGCCGAGCGTCGAGTCC
TGCGGCGGCGCGCCTCGTTCTGCTGAGCAGCCAGGCTGATGGACTCATGGACATGAGGACATATTTGGGATGCAGCCATGCAGGTTACCGAATGACCAAG
GTGATGCGTCGTCGGAACCCGTGTTTGGTTACTTCTACCTTGCTGAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGT
GGATCTCGAAAGATGGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCGCGGTGCGCACATGGAATAGTCGTCCGTGGTT
TATCTATGTTTATTGGGACACTCATGGCATGAAAATGAACTCAATCAATTTGATATGCATATATTATATGGGGTTTAGTTGGGAGGTTCTTCACACCCAC
CTTGCTTTGACATTGTCAACGAATGTTGCTGCCCCGGCCCCTGTGACCTGTAAAAATCCAAGAAGCTACGTATATGCTCCTATATGCTGGAGTTTTGTTT
AATTTGATTTGTTTTAGT