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Detailed information on CNT30495950


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Digitaria exilisMusa acuminata5.4221.0486.9669forward
CNT30459193Digitaria exilisSaccharum spontaneum15.0221.2994.76191forward
CNT30107387Digitaria exilisOryza longistaminata12.4220.6889.87158forward
CNT30100086Digitaria exilisOryza rufipogon12.4226.290.51158forward

Expression of CNT30495950

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCNKTQVAKSHFPVQVKLPTKASAGFRVAKMRNPN*

>peptide 2 (34 aa)
KIAVSELAPLAFPIAQAAAARRRRLRLMQGVVTS*

>peptide 3 (52 aa)
KNSSFRIGSACVSHRSSRSGAPSSSQIDARGGDKLEAATAYLARKLVFGPYL*

>peptide 4 (40 aa)
MLFHYLSGLPIDSYCEAGFLVQQHVNFALRSICKRRRNAS*

>peptide 5 (33 aa)
MIFLQVVQLLSQACCLPLPKLARKPQVMLLMNK*

Sequence

>CNT30495950
AAAAATAGCAGTTTCAGAATTGGCTCCGCTTGCGTTTCCCATCGCTCAAGCCGCAGCGGCGCGCCGTCGTCGTCTCAGATTGATGCAAGGGGTGGTGACA
AGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGC
CTCCCTTTGCCAAAACTAGCAAGAAAACCACAGGTTATGTTATTGATGAACAAATAGGTCAAAATTAAAGTAATAAGCATGTGTAGGTAACAAGGAGGGT
GTTAGATGAAATCTTGTAGCATGAAGTAACATTTTGCAGCATGATATTTACATTTCAAATCTTATCCATTTTATAGCATGAGGTAATATTATTAAATAAA
TGCATTGCTTAGATGTGCATATTGCAACGTGGAGGCTATCTTAATGGTTTTGTTTAGCTTTAGATCATCAATCAGTATGTTACTGTGGTGATTTATGAAC
TAGCAGACTATATTTCGGCTACAGTATTGCCACTACGCAGTAGCAAGCAAACTCCATGAAGTCATGACAAGGTGAGTGAAAATCCTGATGTGAACATGAC
AAGGTGAGTGAAAGTCCTGATGTGAACATGACAAGGTGACTGGAAATTCTGATAGGAGCTTGTCATTAATAGTATACTACTAATCTCTTGTGATTTTGTG
AACTGAAGGGCTCACTGTGACCGCCTTTCTGCCCATGCTGATTCTTCGATAGGAAGTTCATGTGCATCATGCTCAATATCTATTGTACGGTCGGAGGAGT
TATGGAAACTAACGGGAAAGTGCCTTTTTGAGGGTATATATTTTGGAGTCTATTGAGAGTCCATCATGTGCAACAAAACTCAAGTAGCAAAGAGTCACTT
TCCAGTTCAAGTAAAATTGCCGACTAAGGCATCTGCTGGATTTCGTGTTGCAAAAATGAGAAATCCCAATTAACATGCAGTGGACGAATTCAAGGTCATA
TGCTGTTCCATTATCTGTCAGGTCTTCCAATTGATTCATACTGTGAAGCAGGCTTTTTAGTTCAGCAACATGTAAATTTTGCTTTGAGAAGTATTTGTAA
GCGAAGGCGTAATGCGTCTTAGACGTGTTCCCCTTTTTGTGCTCCACTCATATCGTTAGTAAATCTGAAACTCGTTTGTTTCAAAAGTGGTATCAAAATT
GTAAAAGTGAATGCTGTGAGACAATAATGAATGCCGGACTAATGTTCCGGATCTTTCAAAAAAAGAATGCTG