« Back to Digitaria exilis search


Detailed information on CNT30495778


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Digitaria exilisOryza sativa90.1913.6797.88377forward
CNT30523685Digitaria exilisSetaria italica59.0968.6195.14247forward
CNT30549210Digitaria exilisIpomoea triloba85.6530.2985.75358forward
CNT30501657Digitaria exilisCoffea canephora89.237.5985.52373forward
CNT30616382Digitaria exilisSesamum indicum28.7118.8788.33120reverse complement
CNT30220178Digitaria exilisHordeum vulgare100.481798.57420forward
CNT30560435Digitaria exilisActinidia chinensis26.084.7888.07109forward
CNT30592607Digitaria exilisMusa acuminata27.5127.1289.57115forward
CNT30207841Digitaria exilisHelianthus annuus91.3914.2681.68382forward
CNT30687453Digitaria exilisTriticum urartu100.247.8498.33419forward
CNT30154898Digitaria exilisPrunus persica89.231.5581.5373reverse complement
CNT30574571Digitaria exilisVitis vinifera90.436.1491.01378forward
CNT3052251Digitaria exilisAmborella trichopoda65.794.6988.73275forward
CNT30115707Digitaria exilisOryza nivara90.198.6597.88377forward
CNT30175599Digitaria exilisVigna angularis90.1923.3679.84377reverse complement

Expression of CNT30495778

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVPQNPINPLRSTLPRYCSMEAGGLLFRSSARFFIKKK*

Sequence

>CNT30495778
GTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGC
CGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGCT
CCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCTCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGAATCCAATAAATCCACTT
AGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAAAATAAAGGGGGGAGGGAT
TGACCTTTCTAACGCATA