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Detailed information on CNT30495742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30585682Digitaria exilisEchinochloa crusgalli2126.3388.24306forward
CNT30556241Digitaria exilisPanicum hallii24.0219.6491.14350forward

Expression of CNT30495742

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIFLQVVQLLSQACCLPLPKLARKAEVMLL*

>peptide 2 (33 aa)
MLFCYLSGFPIDSYCEAGFLVQQLVNFALRSICK

>peptide 3 (98 aa)
PHRAGGFDLACFLPRRARSLSALVSPRGRRVSRGVRLPSTAICWPRMASACQAFSRASSRRSASRSPGGRPAERRRVHRLQIHAIPANRRAGSSALHP*

Sequence

>CNT30495742
CACCACATCGGGCCGGGGGATTTGATTTGGCTTGCTTTCTCCCGCGGCGCGCGCGGTCTCTCTCCGCGCTGGTGAGCCCCCGGGGGCGACGTGTGTCCCG
CGGGGTTCGCTTGCCTTCGACGGCCATCTGTTGGCCTCGCATGGCTTCCGCTTGCCAAGCGTTCTCGCGCGCGTCGTCTCGGAGAAGCGCCTCCCGCTCG
CCAGGCGGGCGGCCGGCCGAGCGCCGCCGCGTCCACCGGCTTCAGATCCACGCGATCCCCGCTAATCGCCGCGCCGGATCCTCAGCTCTTCATCCTTAAC
CCCACGCCCCCCACCCGCATCCCCGATCGGCCTGCTCCCCTTGTGTGTGTAGGTTGTAGGCCCCCCAAAATAGCAGTTTCAGAATTGGCTCCGCTTGCTT
TTCCCATCGCTCGAGCCGCAGCGGCGCGCCGTCGTCGTCTCAGATTAATGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAA
TTGGTTTTTGGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTAGCAAGAAAAGCAGAGGT
TATGTTATTATGAACAAATAGGTCAAAATTAAAGTAATAAGCATGTGTAGGTAACAAGGAGGGTGTTAGATTAATGAAATCTTGTAGCATGAAGTAACAT
TTTGCAGCATGATATTTACATTTCAAATCTTGTCCATTTTATAGCATGAAGTAATATTATTATATAAATGCATTGCTTAGATGTGCATATTGCAACGTGG
TGGCTATCTTAATGGTTTTGTTTAGCTTTAGATCATCATTGAGTATGTTACTGTGGTGATTTCTGAACTAGCAGACTATATTTCGGCTACAGTATTGCCA
CTACGCAGTAGCAAGCAAACTCCATGAAGTCATGACAAGGTGAGTTAAAATCCTGATGTGAACATGACAAGGTGACTGGAAATTCTGATAGGAGCTTGTC
ATTAATAGTATACTACTAATCTCTTGTGATTTTGTGAACTGAACGGCTCACTGTGACCGCCTTTCTGCCCATGCTGATTCTTCGATAGGAAGTTCATGTG
CATCATGCTCAGTATCTACTCTACGGTCGGAGGAGTTATGGAAACTAACGGGGAAGTGCCTTTTTGAGGGTATATATTTTGGAGTCTATTGATAGTCCTT
CATAGTGCAACAAAACTCAACATAGTGCAACAAAACTCAAGTAGCAAAGAGTCACTTTCCAGTTGAAGTAAAATTACCGTTAAGGCATCTGCTGGATTTC
GTGTTGCAAAAATGAGAAATCCCAATTAACATGCAGTGGAAGAATTCAAGGTCATATGTTGTTCTGTTATCTGTCAGGTTTTCCAATTGATTCATACTGT
GAAGCAGGCTTTTTAGTTCAGCAACTTGTAAATTTTGCTTTGAGAAGTATTTGTAAG