Detailed information on CNT3049510


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377828Cucumis sativusArabidopsis thaliana32.4337.9786.26131forward
CNT30404182Cucumis sativusBeta vulgaris48.7637.8181.22197forward
CNT30711924Cucumis sativusGlycine max49.536.4386.5200forward
CNT30563287Cucumis sativusActinidia chinensis50.2543.7578.82203forward
CNT30312764Cucumis sativusCamelina sativa53.7157.5687.1217forward
CNT30264951Cucumis sativusBrassica rapa56.9368.4588.26230forward
CNT30129110Cucumis sativusCorymbia citriodora45.5447.4284.24184forward
CNT30478263Cucumis sativusArabidopsis halleri32.4337.8686.26131forward
CNT30619828Cucumis sativusCajanus cajan42.0846.9682.94170forward
CNT3027096Cucumis sativusPopulus trichocarpa56.4465.5284.65228forward

Expression of CNT3049510

Peptides detected in this lncRNA

>peptide 1 (50 aa)
ASSSNTLTEAARSFAQIFLPSTTPAKRNFPLGKSPLIKSSVLVPRTKSNP*

>peptide 2 (34 aa)
MLQQGYQQNMSQQEHSTQRELILVEHMHQRRPSI*

Sequence

>CNT3049510
GCTAGTTCCTCCAATACACTGACTGAGGCGGCAAGATCGTTTGCCCAAATATTCCTTCCATCAACTACTCCAGCAAAGAGGAACTTTCCCTTGGGGAAAT
CACCCTTGATTAAATCAAGTGTCTTGGTCCCACGAACCAAATCAAATCCATAGGCAGTGACACCCTTCAAAGAAGTCAAGGTCTTGTATGCTTCAGCAGG
GATATCAGCAAAATATGTCTCAACAAGAACATTCAACCCAGAGAGAGTTGATTCTAGTTGAGCATATGCATCAGAGAAGGCCTTCAATTTGATCTTGTCA
AGAAGGGAAAGAAGGGAGAAGCTCTTGTCCACACCCTTAGCTGGCTTAGAGAGCAACAAATATGACACTGGGCCAATAAGAACTGGGACAGTTTCTACTC
CAAG