Detailed information on CNT304942


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693167Zea maysOryza sativa32.7726.1390.52116forward
CNT30674846Zea maysSetaria viridis42.9429.6992.76152forward
CNT30363915Zea maysSorghum bicolor27.6812.4595.9298forward
CNT30596071Zea maysOryza meridionalis27.6825.7990.8298forward
CNT30101341Zea maysOryza rufipogon32.7726.1990.52116forward
CNT30576149Zea maysOryza barthii32.7723.6790.52116forward
CNT30604008Zea maysOryza punctata31.9233.0491.15113forward

Expression of CNT304942

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MMNLPLPGLMAAMKKKRTLKMTSGSISLMGTPVSMFSCARMPFPVMASPRRRRRQR*

>peptide 2 (55 aa)
PTRHPTFEVSSRVIDTQQSTYARAPRRTVTGKSKRTRLMSEASSSSQQPIPLPRR*

Sequence

>CNT304942
CCCAACGCGACACCCTACCTTCGAGGTCTCATCACGAGTAATTGATACACAGCAAAGCACTTACGCGCGCGCACCGAGACGCACAGTCACAGGTAAAAGT
AAACGCACACGACTCATGTCCGAGGCCAGCAGCAGCAGCCAGCAGCCTATTCCTCTTCCTCGCCGATGATGAACCTGCCATTGCCGGGGTTGATGGCGGC
GATGAAGAAGAAGAGGACGTTGAAGATGACGAGCGGCTCTATCTCGTTGATGGGCACCCCCGTCTCGATGTTCAGCTGCGCAAGGATGCCCTTCCCGGTA
ATGGCCTCTCCAAGACGACGACGACGGCAGCGGTAGCCGCGGGTATGGAGCCGG