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Detailed information on CNT30493988


BLAST search results

BLAST vs Swiss-Prot:
sp|Q33C48|RPOC2_NICTO, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403985Olea europaeaBeta vulgaris6.8423.9985.5483forward

Expression of CNT30493988

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIYKWENKISTLTSACCFNLAFLPLISIPACQKS*

>peptide 2 (35 aa)
FFISYFFKITQLNVLKFEFTTAQKLAHYRLQFHAK*

>peptide 3 (36 aa)
MSILICFKNCHSSILRDRYISTKKSQWVALETRNYM*

Sequence

>CNT30493988
TTTTTTTATTTCTTATTTTTTTAAAATCACCCAACTGAACGTACTAAAATTTGAGTTCACCACTGCTCAAAAACTAGCACATTATCGTCTTCAATTTCAT
GCCAAGTAAACAAAATTCTACTTTTATGTACCTCATATAATTTCCTTGGATACGTATGATATCAATAGCAAATTCAAACGGAAAGCAAATGTCAGAAGTC
ACGTAAATCCACAACATTAATTGGCCCTTAACACTCAACTCCCTTGCAAAAGAATTTATAATACATCCTATTGAGAAAAATAGACAATTTCAGTAGGAGA
AAGGTAAGTTGCCAAAATTAACATAAGCATACAGTCAAAAAGATATGAGACTACACCCTACTACTACCATGCTTTTCAGTGTAACTTTGAATTAGGTTAG
ATGAATCTAATGAACATTTCGGTTAACGTCTGAATAATCAGAAATCCTATCTATTTATTTTTATTTTTTTACCATAAAAATACGAACTAAAGAGTTTTTG
TCTCTCCGGATCATTAGTTTCTAAGAGGTTAGAAGTATATCTTCGCTTGACAGAACGCGAATGCGCATTTATTTGATCTTGATCCTTGTGGAACGAAAGT
AAGACTAGACTGCATCTGCACGCCCTCCTAATAATATCTATAAATGACTTGATTTTGGTAATAGATGAACATTACCATATGTAAATTCAGGTGAATGATA
TACATCGGTACTCTCAGAGCCATGAGAATTGGTGATAAACTTGGATGAATTTCTTGGCTCAATACCATGTCCAGTGCCTTCAGATTTCTGCATAAACAGT
TCACTCAACGACCTTGAGAACGCAAGAATTTACGACTGAATTCCAGTGCATGCAGTGCGAGAAATGATTTATAAATGGGAAAATAAAATATCAACTCTCA
CTTCTGCTTGCTGTTTCAACTTGGCATTCCTTCCATTAATTTCGATCCCTGCATGTCAGAAAAGTTAACTAATTAGCTCAAGACCTTAGTTGTTGATTTC
ATCCTTTTTCAGGATTTATCTCTTAACAAGAAGCATGATTATTTTTTTCATCAAAGGATAAAGTTCGAGTACTTGCATTTATCATGAGCATACTGATCTG
TTTCAAAAACTGTCATTCTTCCATATTGAGAGACAGATATATTAGCACAAAAAAATCTCAATGGGTAGCACTAGAAACACGAAATTATATGTAATAATAC
CTTTGTTTCCACA