Detailed information on CNT30492211


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Olea europaeaOryza sativa28.259.7484.67137reverse complement
CNT30201938Olea europaeaPisum sativum23.311.1991.15113reverse complement
CNT30633047Olea europaeaCapsicum annuum35.8812.8391.38174forward
CNT30188310Olea europaeaSecale cereale25.5715.6483.06124reverse complement
CNT30300556Olea europaeaTriticum aestivum28.258.0283.94137reverse complement
CNT30539896Olea europaeaBrassica napus23.36.4888.5113reverse complement
CNT30212089Olea europaeaHelianthus annuus15.4622.88875reverse complement
CNT30109402Olea europaeaOryza longistaminata28.2510.484.67137reverse complement
CNT30100129Olea europaeaOryza rufipogon28.2513.0584.67137reverse complement
CNT30116403Olea europaeaOryza nivara28.2560.6282.48137forward

Expression of CNT30492211

Peptides detected in this lncRNA

>peptide 1 (40 aa)
FFYSFISNLFFLAWLFGIAEPFPFLYDTNPSQNNRNKSIQ*

>peptide 2 (35 aa)
MAIGVDTTTICRKISGVNLPMDPSIRIYIIQHVQF*

>peptide 3 (45 aa)
MIPIQAKTIETNLFNEKKKERQGFEPSIVLCSKLYWFSRPGLSTT*

Sequence

>CNT30492211
TTTTTTTTTACTCATTTATATCTAATCTATTTTTTCTAGCTTGGCTATTTGGGATAGCCGAGCCATTCCCCTTTCTTTATGATACCAATCCAAGCCAAAA
CAATAGAAACAAATCTATTCAATGAGAAAAAAAAGGAGAGACAGGGATTCGAACCCTCGATAGTTCTTTGTTCAAAACTATATTGGTTTTCAAGACCGGG
GCTATCAACCACTTAGCCATCTCTCCAAAAGATAATTTTTATTTTATTCCTCTAAATAGAACATGGCCATAGGGGTGGATACCACTACTATCTGTAGAAA
GATCTCAGGTGTGAATCTACCGATGGATCCATCTATCCGTATATATATAATCCAACATGTCCAATTTTGAAATATAAAAAACAAAATTCCATTTCCCCTG
ACTCCATGTATGAATAAAGTGGTCAAAGGGGTAGTAATAAGTCATATAGAATCAATTGATTCATGGTAAACTTAAATCCCTCTAT