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Detailed information on CNT3049178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30568468Cucumis sativusActinidia chinensis75.7991.9596.62651forward
CNT30628164Cucumis sativusDaucus carota96.9766.2796.16833forward
CNT30434077Cucumis sativusPapaver somniferum96.2774.395.28827reverse complement
CNT30705838Cucumis sativusPrunus avium91.7347.6796.7788forward
CNT30330128Cucumis sativusDioscorea rotundata69.0368.0897.81593reverse complement

Expression of CNT3049178

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 2 (62 aa)
RVRGSFDVLGIDNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNR*

>peptide 3 (35 aa)
MSGPGSTPGGALPSIPLSFSLATILPPEPKDFDFS*

>peptide 4 (43 aa)
MIRFSGLLATSQAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT3049178
AACGCGTTCGCGGGTCGTTTGATGTTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGA
TAAGGTTCAGTGGACTTCTCGCGACGTCGCAGGCAGCGAACCGCCCACGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGG
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCC
CATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG
GGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGGTACCTCCGCATAGCTAGTTA
GCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC
TCAGTCTGTCAATCCTTACTATGTCTGGACCTGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCC
GGAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACG
GTATCTGATCGTCTTCGAGCCCCCAACTCTCGTTCTTGATTAATGAAAACATCATTGGC