Detailed information on CNT3049140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639966Cucumis sativusNymphaea colorata20.384.3386.1565forward
CNT30712228Cucumis sativusGlycine max51.4132.2280.49164forward
CNT30635301Cucumis sativusCapsicum annuum53.2942.8280170forward
CNT30560479Cucumis sativusActinidia chinensis58.3117.6679.03186forward
CNT30172489Cucumis sativusTrifolium pratense52.3512.9680.24167forward
CNT3075006Cucumis sativusBrassica juncea39.1827.7880.8125forward
CNT30261201Cucumis sativusBrassica rapa39.1814.0880.8125forward
CNT30620323Cucumis sativusCajanus cajan55.89.9679.78178forward
CNT30557050Cucumis sativusPanicum hallii25.0821.0583.7580forward
CNT30112090Cucumis sativusFicus carica56.438.7980.56180forward
CNT30725036Cucumis sativusLupinus angustifolius54.8627.1780175forward

Expression of CNT3049140

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPRSHRRYHRRKTRLRILPTHRLFGEDQGSSSGQSKSMMVR*

>peptide 2 (41 aa)
ILLLPVFNAVAQKLLFVKKQMEVEYIHNSSKKEIDMQSQRI*

Sequence

>CNT3049140
ATATTCTCCTCCTACCAGTTTTTAATGCAGTGGCACAGAAGCTATTGTTTGTGAAGAAGCAAATGGAAGTAGAGTACATACATAACAGTTCCAAAAAGGA
AATCGATATGCAATCACAAAGGATCTAACAAAGAGGTCCAAGACATAGAGGAGGAAGTATGCCCAGATCACACCGGAGATACCACCGAAGAAAAACCCGC
CTGAGAATTTTGCCCACCCATCGGCTGTTTGGAGAGGATCAGGGGTCTTCTTCCGGCCAGTCAAAGTCAATGATGGTGCGGTAGATGGCTCTCCTTCATT
GAATGATGCAACACCATAC