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Detailed information on CNT30490123


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 1e-33

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Olea europaeaSetaria viridis15.3932.2595.15268forward
CNT30524649Olea europaeaSetaria italica30.2115.9697.15526forward
CNT30640799Olea europaeaNymphaea colorata30.168.8689.5524forward
CNT30550219Olea europaeaIpomoea triloba84.0933.7294.191464forward
CNT30378673Olea europaeaArabidopsis thaliana16.7123.3495.88291reverse complement
CNT30619000Olea europaeaSesamum indicum49.3428.1298.25859forward
CNT30283003Olea europaeaChenopodium quinoa16.8930.7993.88294reverse complement
CNT30730372Olea europaeaCorchorus capsularis48.1343.3197.85838forward
CNT30632407Olea europaeaVigna unguiculata48.3631.1797.74842reverse complement
CNT30505428Olea europaeaNicotiana attenuata81.3346.4394.141416forward
CNT30157615Olea europaeaPistacia vera26.6563.2296.12464forward
CNT3092080Olea europaeaSolanum tuberosum19.4758.1596.76339forward
CNT30181978Olea europaeaSecale cereale30.2159.597.15526reverse complement
CNT30300122Olea europaeaTriticum aestivum30.2124.3996.96526forward
CNT30221603Olea europaeaHordeum vulgare30.1643.5796.38525forward
CNT30394721Olea europaeaTriticum turgidum30.114.3197.14524forward
CNT30569655Olea europaeaActinidia chinensis48.5423.7396.21845forward
CNT30543279Olea europaeaBrassica napus30.5650.0998.5532forward
CNT30511493Olea europaeaSolanum lycopersicum10.6320.69100185reverse complement
CNT30147386Olea europaeaMedicago truncatula48.4254.6797.86843forward
CNT30435868Olea europaeaAegilops tauschii30.2137.7397.15526forward
CNT30242955Olea europaeaAvena sativa17.9233.4498.08312forward
CNT30670388Olea europaeaTriticum dicoccoides30.2118.7696.58526forward
CNT3082633Olea europaeaBrassica juncea18.0995.7496.83315forward
CNT30140120Olea europaeaLolium perenne30.2115.8497.15526forward
CNT3017954Olea europaeaZea mays30.514.0196.42531forward
CNT30216563Olea europaeaKalanchoe fedtschenkoi84.2637.7293.461467forward
CNT30208050Olea europaeaHelianthus annuus54.3938.1195.46947forward
CNT30628241Olea europaeaDaucus carota48.3131.1598.69841reverse complement
CNT30689135Olea europaeaTriticum urartu30.2153.0296.58526reverse complement
CNT30721631Olea europaeaTriticum spelta30.2115.1596.96526forward
CNT30346086Olea europaeaEragrostis tef15.3935.3695.52268forward
CNT30595572Olea europaeaOryza meridionalis15.6231.7495.96272forward
CNT30359520Olea europaeaLactuca sativa48.3133.0399.05841reverse complement
CNT30434643Olea europaeaPapaver somniferum26.6562.3795.47464forward
CNT30571858Olea europaeaVitis vinifera78.1739.2794.21361reverse complement
CNT3057903Olea europaeaAmborella trichopoda47.134.2292.93820reverse complement
CNT30108930Olea europaeaOryza longistaminata30.2122.4897.15526forward
CNT30499372Olea europaeaDigitaria exilis30.2115.4897.15526forward
CNT30603680Olea europaeaOryza punctata30.2113.3397.15526forward
CNT30113381Olea europaeaFicus carica25.9101.1295.34451reverse complement

Expression of CNT30490123

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 2 (33 aa)
VTSLFIFVTLVIVNKVETSRKKLRIGRAILPVN*

>peptide 3 (31 aa)
MMEKPASYGLKAYLIIMKRRIIKGFFYRERG*

>peptide 4 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

Sequence

>CNT30490123
TAGTCACGAGTCTCTTTATATTCGTGACTCTTGTCATAGTCAACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAA
CTGATCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTTGAAGGAACTCAGCAAAATGACCTCGTAACTTC
AGGAGAAGGGGTGCTCTCCTATCTTTTAATTAGGAAAGCGGCACATACCAGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAAATGCATTGG
ATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTAT
CCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTA
GTAGCGGCGAGCGAGAGCGGATTGGGGGTTTGAAGAAAAACAAACACGTCTTGTCAGAGCCTCAGCAAAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTT
CATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTATTATTATGAAAAGGAGAATAATAAAGGGCTTCTTT
TATAGAGAGAGAGGTTGAGTCAGGGGGTGGGGAGCTTGAAGAGCGAAGCGAGCCGCGCTAGCCTATTAGTTTTTCAGCAGCAAGCTACGGTCTAACGACC
CCCTAACCTAGGTTGGGGCGAAAACTCCAAAACTAGGGTTCCAAACCTTTCTCTAATAATAATAATAAGGTAAGCTTTCAAGCCCCTTTACTAGAAAGTA
AAGGGCGCAGTGAACTGTAATTGTGAAAAGATTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAA
AACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTG
AGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTGACTTT
CTATTAGATTAGTAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCG
CTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGAC
CGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAG
TAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTA
GATCGTTTGTACAGACAGACTTTTTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGA
AAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTG