Detailed information on CNT30488421


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 4e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Olea europaeaQuercus lobata28.9329.9583.46127forward
CNT30730067Olea europaeaCorchorus capsularis22.324.8587.7698forward
CNT30163033Olea europaeaPistacia vera31.2110.181.75137forward
CNT30634641Olea europaeaCapsicum annuum35.997.3882.28158forward
CNT30567424Olea europaeaActinidia chinensis30.9816.2188.24136forward
CNT30360669Olea europaeaLactuca sativa20.57.3286.6790forward

Expression of CNT30488421

Peptides detected in this lncRNA

>peptide 1 (61 aa)
KILANRLQFGVNGGMKGLVLPKLAADVGSVVAEVPSQSRVRFFGKRISATHFPQWRCLTPL*

>peptide 2 (41 aa)
MWDPLWRRCQAKAGCGSLANGSQRPTSPSGAASLLCKAWWA*

>peptide 3 (52 aa)
MGTGFGPKKFMLWACVLNGPETICCWFWRLIRAWISWIWAWVRWLSPIEQGC*

Sequence

>CNT30488421
AAGATTTTGGCAAATAGACTGCAATTTGGCGTCAACGGAGGCATGAAGGGGCTTGTACTCCCCAAACTCGCCGCCGATGTGGGATCCGTTGTGGCGGAGG
TGCCAAGCCAAAGCCGGGTGCGGTTCTTTGGCAAACGGATCTCAGCGACCCACTTCCCCCAGTGGCGCTGCCTCACTCCTCTGTAAAGCTTGGTGGGCTT
AGGAGGAGAGCCCACTTGTTTCATGGGAACAGGCTTTGGGCCCAAGAAGTTCATGTTATGGGCCTGTGTGTTAAATGGGCCTGAGACCATTTGTTGCTGG
TTTTGGAGATTGATCCGTGCTTGGATTTCTTGGATCTGGGCTTGGGTAAGGTGGTTGAGCCCAATTGAACAAGGCTGTTGATACACAAAGTTCCCACTAT
CCAAGTTCAAATTGGGCTGGAAATTTGACTCTACTGGGT