Detailed information on CNT30488155


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522590Olea europaeaSetaria italica20.344.9686.7583forward
CNT30380834Olea europaeaManihot esculenta21.3220.4285.0687forward
CNT3047350Olea europaeaPrunus dulcis13.7324.5692.8656forward
CNT30397469Olea europaeaTriticum turgidum33.3311.5286.76136forward
CNT30213619Olea europaeaHelianthus annuus16.9121.7794.269forward
CNT30368464Olea europaeaSorghum bicolor33.3316.5584.56136forward
CNT30621647Olea europaeaCajanus cajan16.1828.5789.3966forward
CNT3022287Olea europaeaPopulus trichocarpa22.7922.6390.3293forward

Expression of CNT30488155

Peptides detected in this lncRNA

>peptide 1 (57 aa)
SLELEFGVSAVLSGLVNSMLIANDLPELGADLVAALASLNVKDFSHYLCVFVCAWCF*

>peptide 2 (50 aa)
MQGDWWGKSSEVGVFYWRKARAFHLDLQDMASFFRLVLGGLHNHSSRIILN

>peptide 3 (39 aa)
IRSSWSSESPLYFPVWSIPCSSQMTSQNLAPIWLPHWPP*

Sequence

>CNT30488155
ATTCGCTCGAGCTGGAGTTCGGAGTCTCCGCTGTACTTTCCGGTTTGGTCAATTCCATGCTCATCGCAAATGACCTCCCAGAACTTGGCGCCGATCTGGT
TGCCGCATTGGCCTCCCTGAATGTGAAGGATTTCTCTCATTATTTGTGCGTTTTTGTATGTGCCTGGTGTTTTTGAGAAATTAAGGAAGATTTGTGTTGT
TTAAGTTTTAGAACGTTTTTCTTGCTCCTGTCGGAAGGGTAGTGGAGGAGCGGAAATGCAGGGTGATTGGTGGGGAAAGAGCAGTGAGGTTGGCGTTTTT
TATTGGAGGAAAGCGCGTGCTTTTCACTTAGATTTGCAAGATATGGCTTCCTTTTTTAGGCTTGTGCTTGGTGGCCTCCACAACCATTCGAGTAGAATAA
TTCTAAAT