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Detailed information on CNT30488117


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 2e-55

BLAST vs NONCODE:
NONGMAT000778, E-value = 5e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Olea europaeaSetaria viridis50.6138.5385.43247forward
CNT30532843Olea europaeaEucalyptus grandis37.324.8686.26182forward
CNT30316236Olea europaeaCorylus avellana40.3742.9289.34197forward
CNT30547574Olea europaeaIpomoea triloba70.4996.988.95344forward
CNT30512729Olea europaeaJuglans regia53.4825.3687.74261forward
CNT30372016Olea europaeaArabidopsis thaliana18.8524.6686.9692forward
CNT30276060Olea europaeaChenopodium quinoa33.6125.8785.98164forward
CNT30379936Olea europaeaManihot esculenta38.5256.2984.57188forward
CNT30405823Olea europaeaBeta vulgaris45.2949.1184.62221forward
CNT30711584Olea europaeaGlycine max32.9922.8785.71161forward
CNT3045373Olea europaeaPrunus dulcis40.3725.1388.32197forward
CNT30191304Olea europaeaSecale cereale52.6619.7585.6257forward
CNT30300473Olea europaeaTriticum aestivum39.7520.0485.05194forward
CNT30224354Olea europaeaHordeum vulgare48.9846.0584.1239forward
CNT30391299Olea europaeaTriticum turgidum47.7542.3684.98233forward
CNT30561658Olea europaeaActinidia chinensis52.8722.0584.11258forward
CNT30510505Olea europaeaSolanum lycopersicum35.6616.0291.38174forward
CNT30552635Olea europaeaOryza glaberrima50.223.686.12245forward
CNT30441158Olea europaeaAegilops tauschii50.232.2884.08245forward
CNT30612508Olea europaeaArabis alpina22.544.3387.27110forward
CNT30135610Olea europaeaLolium perenne50.4129.0883.33246forward
CNT3014085Olea europaeaZea mays36.0728.8585.8176forward
CNT30605685Olea europaeaGossypium raimondii38.5224.6185.64188forward
CNT30684236Olea europaeaTriticum urartu47.7528.3585.41233forward
CNT30345702Olea europaeaEragrostis tef32.3819.5584.18158forward
CNT30596122Olea europaeaOryza meridionalis36.0725.4382.39176forward
CNT30359537Olea europaeaLactuca sativa27.0520.0385.61132forward
CNT30369654Olea europaeaOryza glumipatula50.227.8486.12245forward
CNT30107537Olea europaeaOryza longistaminata34.8418.587.65170forward
CNT30149525Olea europaeaBrachypodium distachyon14.1422.8586.9669forward
CNT30100253Olea europaeaOryza rufipogon50.222.2386.12245forward
CNT30575129Olea europaeaOryza barthii39.1423.4687.43191forward
CNT30497701Olea europaeaDigitaria exilis41.662.4684.73203forward
CNT30116094Olea europaeaOryza nivara50.227.8486.12245forward
CNT30604019Olea europaeaOryza punctata29.342.3184.62143forward

Expression of CNT30488117

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MFGPVVSGPKHQIFFASSLSQPNSSDKILERTLGSSLGPIRPSSIASASPSSKGLAS

>peptide 2 (91 aa)
VHGFQKTGFGSNMRGINNPPSSWNDLTASSMNSISMENNITDFEANTPHVFFSQWAFLRSPLKTSDNRIFNFIQPMGLPSKPTENQRQQNL*

Sequence

>CNT30488117
GTACACGGGTTCCAGAAGACGGGGTTTGGCAGTAATATGCGAGGCATAAATAACCCTCCTAGCAGTTGGAATGACCTGACCGCCTCCTCTATGAATAGCA
TCAGCATGGAGAACAACATCACAGACTTCGAAGCAAATACCCCTCATGTTTTCTTCAGCCAATGGGCCTTCCTTCGAAGCCCACTGAAAACCAGCGACAA
CAGAATCTTTAATTTCATTCAGCCAATGGGCCTTCCTTCGAAGCCCACTGAAAACCAGCGACAACAGAATCTTTAATTTCATTCAGGTACTGGACTCCCT
TACACATATCAACCACCATGTTTGGACCGGTTGTCTCAGGACCAAAGCACCAAATTTTCTTTGCAAGCTCCTTATCCCAACCGAACTCCTCGGACAAGAT
CTTAGAACGAACCTTAGGATCATCTCTTGGACCAATACGACCATCGTCAATAGCCTCGGCAAGTCCCTCTTCCAAGGGCCTGGCTTCC