Detailed information on CNT30488054


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-154

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698491Olea europaeaQuercus lobata76.4866.9782.5657forward
CNT30506305Olea europaeaNicotiana attenuata76.8369.9983.79660forward
CNT3096790Olea europaeaSolanum tuberosum76.3773.0584.3656forward
CNT30597673Olea europaeaFraxinus excelsior48.8950.9788.57420forward
CNT30214147Olea europaeaHelianthus annuus75.6780.8583.08650forward
CNT3056329Olea europaeaAmborella trichopoda75.6756.2882.77650forward
CNT3026527Olea europaeaPopulus trichocarpa73.6964.7985.62633forward
CNT30603728Olea europaeaOryza punctata77.0761.1383.84662forward

Expression of CNT30488054

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKGRLLLDVVVSQGTAILKLLPSEDKPLLVWWNTLLILDLCLDIINGV*

>peptide 2 (44 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVLTKICIPPLSLSTK*

>peptide 3 (31 aa)
RECTKLTFIHKWGEPLGTFIATRTSNIENFT*

>peptide 4 (31 aa)
MVSELSTSKVIVLPVKVFTKICIPPRSLRTK*

Sequence

>CNT30488054
CGAGAATGCACAAAACTAACTTTTATTCATAAATGGGGGGAACCCCTTGGAACTTTCATTGCAACAAGAACATCTAATATTGAAAATTTCACATAAGCCA
TTCAAAAATGGCTAAAAACAACCATAGAACAGTGTGTTAACCACACTGTAGATCACACAGCATCACTTGCAGACTATTATCAGCATAACATTTAGAAACC
ACCACGGAGGCGGAGTACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGC
CTCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGCCTTGACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAGGTAATAGTCTTGCCAG
TCAAGGTCTTCACAAAAATTTGCATACCTCCACGGAGCCTCAGAACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCTGCCAGAGTACGACCATC
CTCAAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGTATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATTGTGTCTGAGCTT
TCCACCTCAAGAGTAATGGTCTTGCCGGTCAGAGTTTTGACAAAGATCTGCATTCCTCCCCTTAGCCTAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAA
TGTTGTAATCTGCTAGAGTCCGGCCATCCTCCAGCTGCTTGCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGGATCTTGGC
TTTAACGTTGTCAATAGTGTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTGCCTGTCA