Detailed information on CNT30487971


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FI56|CLPC1_ARATH, E-value = 7e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Olea europaeaOryza sativa55.5832.1180.97289forward
CNT30676635Olea europaeaSetaria viridis45.3867.8280.51236forward
CNT30271581Olea europaeaChenopodium quinoa22.314.7987.93116forward
CNT30404662Olea europaeaBeta vulgaris28.6519.0581.21149forward
CNT30631438Olea europaeaVigna unguiculata67.8853.3282.15353forward
CNT30122306Olea europaeaPhyscomitrium patens25.1945.4983.97131forward
CNT30171906Olea europaeaTrifolium pratense59.8135.6281.67311forward
CNT30144776Olea europaeaMedicago truncatula24.049.5283.2125forward
CNT30254596Olea europaeaAvena sativa61.5424.1378.44320forward
CNT30658759Olea europaeaTriticum dicoccoides26.3523.1486.13137forward
CNT30311914Olea europaeaCamelina sativa63.2753.2480.55329forward
CNT3062430Olea europaeaArabidopsis lyrata59.8126.9780.39311forward
CNT30717839Olea europaeaMalus domestica golden6061.4283.33312forward
CNT30625756Olea europaeaDaucus carota26.3528.2583.21137forward
CNT30354596Olea europaeaLactuca sativa31.5414.7782.32164forward
CNT3053264Olea europaeaAmborella trichopoda31.5426.283.54164forward
CNT30150411Olea europaeaBrachypodium distachyon63.2765.1580.85329forward
CNT30101573Olea europaeaOryza rufipogon46.3528.4581.33241forward
CNT30558331Olea europaeaPanicum hallii29.8118.7285.81155forward

Expression of CNT30487971

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GLHCSRTATVSVGHAISVKEQVTYQRVMRCHLTTFWKWKYLMSGGLVLWVRFHHSQHQR*

Sequence

>CNT30487971
GGCCTACATTGTTCAAGGACTGCCACAGTTTCTGTAGGTCATGCGATAAGTGTTAAAGAACAGGTAACATATCAGCGCGTCATGAGATGCCACTTAACAA
CATTTTGGAAGTGGAAATATTTGATGTCTGGGGGGTTGGTTTTATGGGTCCGTTTCCATCATAGTCAACATCAACGATAACCGAATCACCTTCTTTGATT
TCACGTGCAAGCATCTTCTCTGCCATGCTGTCCTCCAAAAGTCTCATAATAGCTCGTCTAAGCGGTCTTGCTCCATAGCTTGGGTTGTATCCTTCCTCAA
CGACCCTGTCTCTAAATCTCTCGGTCACCTGAAGTTCAATATCTTTGCTTTTGAGTCTCTCGAATACCTCCTTCAACATTATATCAGCAATCTCCTTCAC
CTCCAGCTTGGTGAGCTGCCGGAATACAATCATCTCATCCAATCTATTTAAAAATTCTGGTCTGAAATATTGTTTCAGCTCCTCTGTCACCAGGCTCTTG
ATACGGTTGTAACTGCTATC