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Detailed information on CNT30487670


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 7e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509419Olea europaeaSolanum lycopersicum27.3912.681.94155forward

Expression of CNT30487670

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MVRAGPVRSQVHCTNGPGQTWAPPTKDVQIPSLKIVVARAHKPTPCLEISYSDPMSISIIESQGNLGISPGFYD*

>peptide 2 (42 aa)
HKISKGHIIKKHITTLTYTVEKGTKRKSPSKPKRLLHNRNHR*

>peptide 3 (44 aa)
TKYPRGILLRNILQPSLTPWRRVQNEKAHQSRNDSYIIETIDES*

>peptide 4 (35 aa)
MIINHMFLLIRRTRVPHRCELIRFCIHSQPLLDRE*

Sequence

>CNT30487670
GCACAAAATATCCAAGGGGCATATTATTAAGAAACATATTACAACCCTCACTTACACCGTGGAGAAGGGTACAAAACGAAAAAGCCCATCAAAGCCGAAA
CGACTCTTACATAATAGAAACCATAGATGAATCATGATAATCAATCACATGTTTCTTCTCATCCGACGAACAAGAGTTCCTCATCGCTGTGAGCTCATAA
GGTTTTGTATCCATAGCCAACCATTGCTCGATCGTGAATAGTTTTTGGGCACATTGCTGGTGGGCCCCAGTAGTCGTCACCTCCACGTAGTTACAATACC
ATCCATGGTGCGGGCCGGTCCCGTCAGAAGTCAAGTTCATTGCACAAACGGGCCCGGTCAAACATGGGCCCCTCCCACTAAAGATGTCCAAATTCCCTCT
CTCAAAATAGTTGTAGCCCGGGCCCATAAGCCCACCCCATGTCTCGAGATTTCTTATTCGGATCCCATGTCCATTAGCATCATAGAGAGTCAAGGTAATC
TTGGAATCAGTCCCGGCTTTTATGATTGATCCGGTCCTCACATACACCGTGTAGACACAATCAACA