« Back to Olea europaea search


Detailed information on CNT30486152


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Olea europaeaSetaria italica32.3839.0779.18293forward
CNT30530404Olea europaeaEucalyptus grandis22.4357.1879.31203forward
CNT30316147Olea europaeaCorylus avellana33.3740.5481.46302forward
CNT30703138Olea europaeaQuercus lobata42.172.7185.3381forward
CNT30499549Olea europaeaCoffea canephora45.9784.984.38416forward
CNT30615836Olea europaeaSesamum indicum25.7560.8481.97233forward
CNT30277485Olea europaeaChenopodium quinoa38.6741.0382.86350forward
CNT3020608Olea europaeaCitrullus lanatus39.6781.4182.73359forward
CNT30729539Olea europaeaCorchorus capsularis41.6656.179.58377forward
CNT3068683Olea europaeaQuercus suber42.177.4485.3381forward
CNT30524728Olea europaeaPhaseolus vulgaris28.7348.1582.69260forward
CNT30506399Olea europaeaNicotiana attenuata28.7378.5586.54260forward
CNT30637312Olea europaeaCapsicum annuum20.6643.4979.68187forward
CNT3098150Olea europaeaSolanum tuberosum13.8125.5184125forward
CNT30182233Olea europaeaSecale cereale32.3847.1179.18293forward
CNT30223417Olea europaeaHordeum vulgare18.7874.8981.18170forward
CNT30590847Olea europaeaMusa acuminata29.7258.8678.44269forward
CNT3084565Olea europaeaVigna radiata28.7315.3883.08260forward
CNT30539234Olea europaeaBrassica napus26.7426.4581.82242forward
CNT30511842Olea europaeaSolanum lycopersicum15.1429.9183.94137forward
CNT30143836Olea europaeaMedicago truncatula26.0840.4883.47236forward
CNT30261302Olea europaeaBrassica rapa26.7446.8181.82242forward
CNT30447453Olea europaeaSaccharum spontaneum18.7829.6781.76170forward
CNT30131528Olea europaeaLolium perenne13.4826.4684.43122forward
CNT30653881Olea europaeaRosa chinensis30.7226.0382.01278forward
CNT30718631Olea europaeaMalus domestica golden37.4659.0680.53339forward
CNT30338563Olea europaeaEragrostis tef29.7264.9881.41269forward
CNT30477892Olea europaeaArabidopsis halleri26.5222.4380240forward
CNT30360575Olea europaeaLactuca sativa40.3360.5383.01365forward
CNT30411763Olea europaeaPapaver somniferum21.7717.4882.23197forward
CNT30570592Olea europaeaVitis vinifera20.7758.289.89188forward
CNT30645151Olea europaeaCannabis sativa4037.9981.22362forward
CNT3055709Olea europaeaAmborella trichopoda43.9860.8679.4398forward
CNT30319856Olea europaeaAsparagus officinalis13.8144.6482.4125forward
CNT30579496Olea europaeaEchinochloa crusgalli23.4354.2282.55212forward
CNT30499107Olea europaeaDigitaria exilis23.4354.2280.19212forward
CNT30594668Olea europaeaEragrostis curvula19.6752.8280.34178forward
CNT30604168Olea europaeaOryza punctata13.4844.283.61122forward
CNT30174824Olea europaeaVigna angularis20.6619.6882.89187forward
CNT30332943Olea europaeaCynara cardunculus37.0264.382.69335forward
CNT30726386Olea europaeaLupinus angustifolius25.7525.9279.4233forward
CNT3064271Olea europaeaSelaginella moellendorffii22.136.3681.5200forward
CNT3050773Olea europaeaCucumis sativus38.3461.7480.98347forward

Expression of CNT30486152

Peptides detected in this lncRNA

>peptide 1 (37 aa)
AGVAVGHHTLRWCSLAKTAHPLSLPVLACLMSLLHLI*

>peptide 2 (67 aa)
MSNEFEPRVSKMVHDVLFPTGEEIVNYDHAVASANQTVNQMASDEPGPTGHHDSQTLSLQAQRYFSA*

>peptide 3 (46 aa)
CGCCSGSPYTSLVLVSKNRAPTLFASPSMFNVPTTFDMIVLTGLCL*

>peptide 4 (73 aa)
MEAGVLDEGRRAKMRVAMAMPTKTNTRRCSRSMYRTGRITLNDGFGGFGEYASVTGGASCPLNINSEPIYMRV*

>peptide 5 (71 aa)
MPSEYQFRTHIYACMIVICTYIYVDCIKRSEERKRKVKSTESLCVDRKCRNFAGVFRNFFHRSVGLMSDRLK

>peptide 6 (81 aa)
MSSNLGFPKWCMTFSFLPVKKLSTTITLSPLLIRRSTKWLPTNPAPPVTTILKPFLFRPRGIFPPELKDDPNPKPVAWLFW*

Sequence

>CNT30486152
TGCGGGTGTTGCAGTGGGTCACCATACACTTCGCTGGTGCTCGTTAGCAAAAACCGCGCACCCACTCTCTTTGCCAGTCCTAGCATGTTTAATGTCCCTA
CTACATTTGATATGATAGTCTTGACAGGATTGTGCTTGTAATGAACAGGAGATGCGGGGCAAGCAAGGTGGTAGATCTGATCGACCTCCAATAGAAGTGG
CTCAACGACGTCATGTCGAATGAGTTCGAACCTAGGGTTTCCAAAATGGTGCATGACGTTCTCTTTCCTACCGGTGAAGAAATTGTCAACTACGATCACG
CTGTCGCCTCTGCTAATCAGACGGTCAACCAAATGGCTTCCGACGAACCCGGCCCCACCGGTCACCACGATTCTCAAACCCTTTCTCTTCAGGCCCAGAG
GTATTTTTCCGCCTGAGTTGAAGGACGACCCAAATCCGAAACCAGTGGCGTGGTTATTCTGGTAGATGAGTCTATGAGACTGAGTCAACTCGGAGGGGAA
AGCCGAGTTAGAGATGGAGGCCGGGGTGTTGGATGAGGGGAGGAGGGCGAAGATGAGGGTGGCGATGGCAATGCCTACGAAAACAAATACGAGACGCTGC
TCACGGAGCATGTACCGAACCGGACGAATCACACTCAACGATGGCTTCGGAGGCTTTGGCGAGTACGCCTCCGTCACCGGCGGCGCTTCATGCCCTCTGA
ATATCAATTCAGAACCCATATATATGCGTGTATGATTGTAATCTGTACCTATATATATGTAGACTGTATCAAGAGATCAGAGGAGAGGAAGAGAAAAGTG
AAATCAACTGAGTCTCTATGTGTAGACCGAAAATGCCGGAATTTCGCCGGAGTTTTCAGGAATTTCTTCCACCGGAGCGTGGGGTTGATGTCCGATAGAC
TGAAG