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Detailed information on CNT3048584


BLAST search results

BLAST vs Swiss-Prot:
sp|A0ZZ72|RK16_GOSBA, E-value = 2e-45

BLAST vs NONCODE:
NONCSAT000320, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Prunus dulcisOryza sativa66.775.1486.98215forward
CNT30641762Prunus dulcisNymphaea colorata66.776.1990.7215forward
CNT30405603Prunus dulcisBeta vulgaris98.7641.6287.74318forward
CNT30185636Prunus dulcisSecale cereale66.7713.8787.91215forward
CNT30294378Prunus dulcisTriticum aestivum66.7710.5388.37215forward
CNT30385899Prunus dulcisTriticum turgidum27.339.4784.0988reverse complement
CNT30540371Prunus dulcisBrassica napus65.8435.187.74212forward
CNT30555950Prunus dulcisOryza glaberrima66.7714.1986.98215forward
CNT30442098Prunus dulcisAegilops tauschii66.7732.4888.37215forward
CNT30243771Prunus dulcisAvena sativa66.7718.6588.37215forward
CNT30656274Prunus dulcisTriticum dicoccoides66.7743.1787.91215forward
CNT30598237Prunus dulcisFraxinus excelsior56.5229.5982.97182forward
CNT30447455Prunus dulcisSaccharum spontaneum99.0744.4384.01319forward
CNT30134355Prunus dulcisLolium perenne65.848.4286.79212forward
CNT30717952Prunus dulcisMalus domestica golden21.4319.2292.7569forward
CNT30689031Prunus dulcisTriticum urartu66.773.8688.37215forward
CNT30620547Prunus dulcisCajanus cajan41.342.3692.48133forward
CNT30411335Prunus dulcisPapaver somniferum66.7724.9191.16215forward
CNT30574575Prunus dulcisVitis vinifera101.2421.3691.1326forward
CNT30585636Prunus dulcisEchinochloa crusgalli99.075.5684.95319forward
CNT30604550Prunus dulcisOryza punctata57.768.4986.02186forward
CNT30557814Prunus dulcisPanicum hallii43.4813.5489.29140forward
CNT30550799Prunus dulcisOryza brachyantha43.4810.3985.71140forward
CNT30724130Prunus dulcisLupinus angustifolius48.7647.0190.45157forward

Expression of CNT3048584

Peptides detected in this lncRNA

>peptide 1 (30 aa)
FLLLRSFHKVSTGFNYPTQYSGDPFPDVYV*

>peptide 2 (36 aa)
FCYSAHFIKFLPGLTTLPNIREILSPTCTCRCRSYG*

>peptide 3 (33 aa)
MRTHIFPPRRAFRVIARRPASICLDVIQAGSSA*

Sequence

>CNT3048584
TTTCTGCTACTCCGCTCATTTCATAAAGTTTCTACCGGGTTTAACTACCCTACCCAATATTCGGGAGATCCTTTCCCCGACGTGTACGTGTAGGTGTAGG
TCTTACGGGTAACGGGTTTGTCTGGAATATGCGTACCCATATTTTTCCACCGCGGCGTGCGTTTCGTGTCATTGCTCGCCGCCCTGCTTCTATTTGTCTA
GATGTGATCCAAGCGGGTTCAAGCGCTTGAAGAGCATATCTACCGAAGCAAATACGATTGCCTCGATAAGATATTCCTTTCATTCTTCCTCTATGTTGTT
TACGGAATCTGGTTCTTTTGGG