« Back to Chara braunii search


Detailed information on CNT30484250


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671345Chara brauniiSetaria viridis26.0317.4294.71189forward
CNT30702366Chara brauniiQuercus lobata26.0318.9894.18189forward
CNT30378673Chara brauniiArabidopsis thaliana25.6214.9294.62186forward
CNT30283003Chara brauniiChenopodium quinoa26.0319.7994.71189forward
CNT3020470Chara brauniiCitrullus lanatus26.0335.0694.18189forward
CNT30289016Chara brauniiTriticum aestivum26.0359.8194.71189forward
CNT30221833Chara brauniiHordeum vulgare26.0313.8592.06189reverse complement
CNT30543276Chara brauniiBrassica napus25.6215.5895.16186reverse complement
CNT30554477Chara brauniiOryza glaberrima26.0326.1493.65189forward
CNT30147396Chara brauniiMedicago truncatula25.766.2994.65187reverse complement
CNT30441199Chara brauniiAegilops tauschii26.0319.0394.71189reverse complement
CNT30245388Chara brauniiAvena sativa26.0354.6294.71189forward
CNT30605073Chara brauniiGossypium raimondii26.0312.4394.71189forward
CNT3067980Chara brauniiLeersia perrieri22.0453.1691.88160forward
CNT30720411Chara brauniiTriticum spelta26.0352.6594.71189forward
CNT30346087Chara brauniiEragrostis tef26.0318.2894.71189reverse complement
CNT30434609Chara brauniiPapaver somniferum25.6233.794.62186reverse complement
CNT30571801Chara brauniiVitis vinifera26.0314.4894.71189forward
CNT30644906Chara brauniiCannabis sativa11.1625.3191.3681forward
CNT3057237Chara brauniiAmborella trichopoda26.0313.792.59189reverse complement
CNT3038324Chara brauniiCucumis melo26.0310.0294.18189forward
CNT3099864Chara brauniiOryza rufipogon14.7446.3294.39107forward
CNT30557400Chara brauniiPanicum hallii26.0313.7892.59189reverse complement

Expression of CNT30484250

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYQHMPSLLIVRTDAFIIIILLASLGRRFQHIARFCL*

>peptide 2 (37 aa)
MLKKIPLCRGISLVHAKTMRALAPHVTMRIGPYHHNW*

>peptide 3 (36 aa)
GISSLVVTDDHLPPILHIQSRLSMQSYSKGARGLTV*

>peptide 4 (42 aa)
MTTSHLSYTFNQGCQCKAIVKVHGVLPFSRWYSASSRRIQFH*

Sequence

>CNT30484250
GTGGTATTTCAAGCTTGGTAGTCACTGATGACCACCTCCCACCTATCCTACACATTCAATCAAGGTTGTCAATGCAAAGCTATAGTAAAGGTGCACGGGG
TCTTACCGTTTAGCCGCTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTGAGCCCATGTTGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCA
GGTCGCTACTTATGCGACACAATTGTGTTAATTGAAATAAACTTCGAACATCATTTCAACCGAGGCCTTCCTCCTTCGTGTCGCCACGAAGTTCAGACTA
TATCATCATCCCAAGCAGGGATGTCTGGCATGTAGTCGTTGAGGAGCGCAACGCATGTATCAACACATGCCTTCCCTGCTGATTGTCCGCACTGACGCAT
TCATTATCATTATTTTGCTTGCATCACTCGGTCGGAGGTTCCAGCATATAGCCAGATTTTGTCTTTGATGCTGAAGAAAATACCCCTTTGTCGAGGAATT
TCGCTTGTTCATGCGAAAACAATGCGCGCTCTTGCGCCTCATGTCACCATGAGGATTGGACCATATCATCACAATTGGTAGTTTCCGTGCGTCTGGCGTA
TGGCCTCTGAGGATCGATAGAGACGCTTCGTCTAGCGAGCCTGCTGATTTACTCTATCCACTCGAGTGGCCTTTCTGCCGTATTTCTCGGTAGTGTATGT
AAGAATTGCGATGCCAAGGCCACTCG