« Back to Chara braunii search


Detailed information on CNT30484247


BLAST search results

BLAST vs Swiss-Prot:
sp|P80498|COX2_SOLTU, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618341Chara brauniiSesamum indicum9.4124.2689.31131reverse complement
CNT30637481Chara brauniiCapsicum annuum9.3429.0288.46130reverse complement
CNT30300699Chara brauniiTriticum aestivum9.4124.390.08131forward
CNT30223174Chara brauniiHordeum vulgare9.4124.9589.31131reverse complement
CNT30384972Chara brauniiTriticum turgidum9.4121.1690.84131forward
CNT30437813Chara brauniiAegilops tauschii9.4129.0590.84131forward
CNT30207423Chara brauniiHelianthus annuus9.4122.1388.55131reverse complement
CNT30369921Chara brauniiOryza glumipatula4.8929.5792.6568reverse complement

Expression of CNT30484247

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MARNGTGFTYQVRYPNLTFCFIEAVLRLSRAAFRHDLSLGIPRTCSSHPWPGPA*

>peptide 2 (35 aa)
MGPASHIKSVILTLPSASSKPFFDFRVLLSGMTYH*

>peptide 3 (47 aa)
MVWQSWSRPAIEICDLGALNNSLHHRSGCILKSVLPRLCSVHISNLK*

>peptide 4 (44 aa)
MYYGNSDATLRAGTRTKKLKAFPNFLGRGNFVALRIACIKGLYL*

Sequence

>CNT30484247
ACATGCGCTCCCGCCACCTGCTTGAGACGTGGACAGTAATGTATGGCCCGGAATGGGACCGGCTTCACATATCAAGTCCGTTATCCTAACCTTACCTTCT
GCTTCATCGAAGCCGTTCTTCGACTTTCGCGTGCTGCTTTCAGGCATGACCTATCACTAGGCATACCACGCACGTGTAGCTCACACCCTTGGCCTGGGCC
AGCTTGAGATGGTGTGGCAGAGTTGGAGCCGCCCTGCAATCGAGATCTGCGACCTGGGCGCACTCAATAATTCCTTGCATCATAGGAGTGGCTGCATCTT
GAAATCCGTATTGCCAAGGCTCTGCAGCGTCCATATAAGCAATCTGAAATAACCATTCGTTTTTCATTTTGTATTGTATGTTCTCGTTTTGTTGATGGGC
CCGTGAGAGGTCGCGGGCTGCTTCATAAGTAGAGTAGAGAGGCAAGCAACAAAGTGCTTGTACAACGTCTCTAATCTAATTAAATTAGATTAGAATAGAA
TGTCGGTCGACCGTATATTTGAACACAGAACAGCTCCCTAGGTTGGATTCGAACCAACGACCCAATAGATAGGGTAAGCAGTGTGTGTAATCTGACTAAG
CTTCCCTCTGAACCGTGCGTGCAAGATTTCCAAGCACACGGCTCTCCATCAGTTTGGCAAGACTACTGACTGTTTCCCTTCCATTTTCATGTACTATGGA
AACTCTGACGCCACACTTCGTGCCGGCACACGGACAAAAAAGTTGAAGGCGTTCCCGAATTTTCTTGGTAGAGGCAACTTCGTTGCACTTAGGATCGCCT
GTATTAAGGGTCTTTATCTATAGATTAAAAAGCATTCAAAGTTTCTTGTTTGAAATAATCGAAACACATCAAAATGGTGCTGGCAGTACCAAACAATAGA
AAGATTTTACAAAAATAGGTCAAATTATCTATGATTAGATTATTATAAAACAGATTAGCAGTGGTTAAAGGATTATTGATCAGCAATAGAATTGTCATCA
AAACACTCAGTAAACCCAACCATCCCACATTACGCACTAATGGTGGATAATAGTGCTCAAAATCACTCCATAGACAAGTAATAAGATAGTGGCATTTATA
AGAAAGATTTATGGAAAGATGGCTAAAAAATCATTGTCAAACATGGCTATCTTCTCTTTTTTGGTCGGCGGCCGTCATGACAACCGGTCCACCATAGGTT
GACCCATCCCAGTCCTCTCGTACTAGGGATGGCTTCTCTCAGTTCTCTTCAAATCACCAACGGTAGATAGGARCCGAACTGTCTCACGACGTTCTAAACC
CAACTCACGTCTTTAAACCTTTGACAGATTTAAAAGGACTCTATCTTAGTCCGATTCAGGCTCGAAGAAAAGAAAAGAAAAGAAAGAGTGAG