Detailed information on CNT30484157


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363124Chara brauniiSorghum bicolor3.525.1110057reverse complement
CNT30550626Chara brauniiOryza brachyantha3.9922.1896.9265forward

Expression of CNT30484157

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MHLVQKGIKIRVEFLSSGARPNTLPLCYFAKHLITALPVCLCRSKPIQPNPIRSK*

>peptide 2 (39 aa)
MCKLLHSCAWRLTRVFSFALEALSDFIELPSISPRVPPL*

>peptide 3 (40 aa)
MVLAPVHSILYVPGALNRPEIFTMLDSSECIWSRKASKYV*

>peptide 4 (29 aa)
MAQEEEEEEVDEVLTARGEFFLFLFFIFF*

>peptide 5 (31 aa)
RRDEARPVSYYAFFKGWLLPSPPPGSAFIWV*

>peptide 6 (41 aa)
MCSMELLSSPEHNATPFRLCLTGSIACIHSLSRCVMFGGRQ*

>peptide 7 (49 aa)
MTLSHGPNSTRSITIQSNPIQSYSIQSHLIHLMIQSVILLIIQSAKIQF*

>peptide 8 (49 aa)
MLFCQAFDHSTSCLSVPIQANPTQSYSIQVNSIQSNPLPSMIQSDKIQF*

Sequence

>CNT30484157
TTCGGCGTGATGAAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTCGGCGTTTATCTGGGTATAGTC
TGCCATGGCACAGGAGGAGGAGGAGGAGGAGGTTGACGAGGTCCTCACTGCTCGTGGAGAATTTTTTTTGTTTTTATTTTTTATTTTTTTTTGAACAAGT
GCTCCAGTCTATTCGTGGGGAGCAGCACGTGCTGGGAACCGGGCCCAGCGTCCCATATCGAATTATACAGATCAACTGCTCGTGGAGACTATAAGAGAGT
ATTTGGTCAACAGAAGCATGGTTCACACACTGTATCTAGAATAGTACACATCACCTCAACAACTTTGTGTCCCGCAATTCGGAGGAGATGTGCAAATTGC
TGCACTCCTGTGCCTGGAGGCTCACAAGAGTGTTTTCCTTCGCCTTGGAAGCCTTGAGTGACTTCATAGAGCTGCCGTCTATCTCTCCCCGAGTGCCACC
ATTGTGAAATATTATATATAGTGATGTGACAATATATACACTATACACTATTATACAGTACCTTTATTGTAATTAGGCTAGCATTCATTGGATTTGCAGT
CCAATGGTTCTTGCTCCAGTACACAGCATACTATATGTACCTGGAGCTCTAAATCGTCCCGAGATATTCACAATGTTGGACTCCTCGGAATGCATCTGGT
CCAGAAAGGCATCAAAATACGTGTAGAGTTTTTGAGTAGTGGAGCAAGGCCCAATACATTACCTTTATGTTATTTTGCCAAGCATTTGATCACAGCACTT
CCTGTTTGTCTGTGCCGATCCAAGCCAATCCAACCCAATCCTATTCGATCCAAGTGAACTCGATTCAATCCAATCCGCTCCCTTCAATGATCCAATCAGA
TAAGATCCAGTTTTGATTGGAGAAGATCCAGGGCTGCTTGGATAAGATCCATTTCGATCCGATTCTTTTTTCTTCTTTTTTTTTGATAGTTCGATCGAAT
CCATTTGGATGATTGGATCCAATCCAATCTGATCCAAAGTCATGACCTTATCCCACGGACCCAACTCAACCCGATCCATCACAATCCAGTCCAATCCAAT
CCAATCCTATTCGATCCAATCCCATCTGATCCATTTGATGATCCAATCTGTGATTCTTTTGATCATCCAGTCGGCTAAGATCCAGTTCTGATTGAAGGTC
CAGTTTGTGCTCGGATAGGATCCGGTTTGATCCGATCCATTCAGATGATGTGATCGTACACAATACGATGTGACCGGATTTTATCCAATCTGGTCCAAAC
CCGAGATGATCTGAGCTTATCCAATGCAACTCAATCCACTACAATTCAATCCAAACCTAATTCGACCCAATCCGACCCAATCCGTTAACCAGCCTGGAAA
TTGAACCAGGAATGTGGTGGCCGTTGGGAGTCGCGCCCCCCTAGTGTGAAGTTGTGGATATTGTGGAGTGGGCCAGTGCGCCGTCGTGGTTCGAGGTCAT
GTGCTCGATGGAGCTACTGTCTTCCCCCGAACACAATGCAACTCCATTTCGGCTGTGCCTGACCGGAAGTATAGCTTGTATACATTCATTATCAAGGTGC
GTTATGTTCGGGGGAAGACAGTAGTGTG