Detailed information on CNT30484006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617597Chara brauniiSesamum indicum43.5314.6481.65158forward
CNT30202037Chara brauniiPisum sativum61.716.8881.25224forward
CNT30186776Chara brauniiSecale cereale27.552.4984100forward
CNT30560220Chara brauniiActinidia chinensis61.7114.4181.7224forward
CNT30205718Chara brauniiHelianthus annuus28.6525.7484.62104forward
CNT30682212Chara brauniiTriticum urartu61.166.7481.98222forward
CNT3051926Chara brauniiAmborella trichopoda41.8710.7181.58152forward
CNT3024232Chara brauniiPopulus trichocarpa24.5243.4184.2789forward
CNT30585620Chara brauniiEchinochloa crusgalli61.164.3382.43222forward

Expression of CNT30484006

Peptides detected in this lncRNA

>peptide 1 (46 aa)
FPTGPAKVGQHIVETATGRRDRQRHQMIDDSRTVFTRCGEPSVLLW*

>peptide 2 (29 aa)
LSHWASKSRPAYSRDCNWQKRPPAAPDDR*

Sequence

>CNT30484006
CTTTCCCACTGGGCCAGCAAAAGTCGGCCAGCATATAGTAGAGACTGCAACTGGCAGAAGAGACCGCCAGCGGCACCAGATGATAGATGATTCGCGCACA
GTCTTCACGAGATGTGGCGAACCTAGCGTACTCCTTTGGTAAATATATAACCTACAGAGAAATGAGATAAACCAACTAATCTTGCCTGTACAATTGAAAG
AGCTACAGGTTTGTCTCTCCAGCGAATTAAATTTGCTAAAGGAGTACGTTCATGTGCCCAAGCTAGCGTTTCGATTAAATCTTGCCAATAAGCACGCCAT
GAAATAAGGAACATAAAACCTGTTGCCCATATAAGATCACCAAATAAGAACATCCAAGCCCAT