Detailed information on CNT30483616


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672414Chara brauniiSetaria viridis2617.3382.69104forward
CNT30520781Chara brauniiSetaria italica2616.1582.69104forward
CNT30516978Chara brauniiJuglans regia2514.6683100forward
CNT30560479Chara brauniiActinidia chinensis27.510.4581.82110forward
CNT3084834Chara brauniiVigna radiata21.2522.0883.5385forward
CNT30249784Chara brauniiAvena sativa2612.6782.69104forward
CNT30454500Chara brauniiSaccharum spontaneum22.2524.5985.3989forward
CNT30344813Chara brauniiEragrostis tef31.524.0982.54126forward
CNT30578384Chara brauniiOryza barthii31.7532.481.89127forward
CNT30557050Chara brauniiPanicum hallii26.2527.6384.76105forward

Expression of CNT30483616

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTKPDPCSGEAVGKPHLHTPQKGIDRRLVRGEIGQEPAHQRA*

>peptide 2 (87 aa)
PDVAALQRVLDVVEEEVGPSDTRQASEDEPTGEPCPPVGALELVRLLLPPCERQRLQPPARCTLWECHDSVHAQAYRQNDHQSRCRR*

>peptide 3 (86 aa)
MNPPVNPAHPSALWSLSASFSLPVSVSVFNPPLDAPSGNVTIPYMLRHTDRMTTSPAAAADPDDKARSVFRRGRGQAPPPHPSKGD*

Sequence

>CNT30483616
CCAGATGTTGCTGCTCTACAGAGGGTATTGGATGTTGTTGAGGAGGAAGTAGGCCCAAGCGACACCCGACAGGCCTCCGAAGATGAACCCACCGGTGAAC
CCTGCCCACCCGTCGGCGCTCTGGAGCTTGTCCGCCTCCTTCTCCCTCCCTGTGAGCGTCAGCGTCTTCAACCCCCCGCTAGATGCACCCTCTGGGAATG
TCACGATTCCGTACATGCTCAGGCATACCGACAGAATGACCACCAGTCCCGCTGCCGCCGCTGATCCAGATGACAAAGCCAGATCCGTGTTCCGGAGAGG
CCGTGGGCAAGCCCCACCTCCACACCCCTCAAAAGGGGATTGACCGACGTTTGGTACGCGGGGAGATTGGACAGGAACCAGCCCACCAGAGGGCTTGAAG