Detailed information on CNT30483389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183444Chara brauniiSecale cereale13.6749.483.74123forward
CNT30669339Chara brauniiTriticum dicoccoides13.6751.2583.74123forward
CNT30309525Chara brauniiCamelina sativa12.6727.685.96114forward
CNT30627054Chara brauniiDaucus carota11.1127.787100forward

Expression of CNT30483389

Peptides detected in this lncRNA

>peptide 1 (84 aa)
RCISRGWLCIWCDRASPTHIKDVRDGPQGLAIDESVVQVDQHKLVQHHAELVGHHGLKVVEALVSRKGMTTHSKCPYRVLNADL*

>peptide 2 (82 aa)
PVHQSWLALYLVRPSISNTHQRCSRWSSRSGYRRECRSSRPAQTGPASRGTRWSSRIKSRRGIGESERHDHPLKMPIPRLER*

>peptide 3 (48 aa)
MHKRRSLFFFRTRKPAQNLKLTAQWPLHQSLSVVSTHNVRVAKLTLVQ*

>peptide 4 (36 aa)
MVSPTTGIALAKLVITVAPQKLICPHGNTYPIKAVTI

>peptide 5 (31 aa)
GASVVVGFVFGATEHLQHTSKMFEMVLKVWL*

Sequence

>CNT30483389
CCGGTGCATCAGTCGTGGTTGGCTTTGTATTTGGTGCGACCGAGCATCTCCAACACACATCAAAGATGTTCGAGATGGTCCTCAAGGTCTGGCTATAGAC
GAGAGTGTCGTTCAAGTAGACCAGCACAAACTGGTCCAGCATCACGCGGAACTCGTTGGTCATCACGGATTAAAAGTCGTCGAGGCATTGGTGAGTCGGA
AAGGCATGACCACCCACTCAAAATGCCCATACCGCGTCTTGAACGCTGATTTGTAGCGATCTTGCGGGTGTATCGAGATTTGATGATAGCCCGACTTCAA
GTCCAACTTGGAAAAATACTTTGCCCCGCCCAAACGCTCAGAAGATCGTCGATGTGAGGAAGAGGCCCCGCATTCTTGACGGTTTGCATGTTGAGCTTGT
GATAGTCAATGCACAAGCGAAGGTCCTTGTTCTTCTTCCGTACAAGAAAACCGGCGCAAAACCTCAAATTGACGGCCCAGTGGCCTCTCCATCAGTCCCT
AAGTGTGGTCAGTACTCATAACGTTCGGGTAGCGAAGCTTACACTTGTTCAATAGTTCGTCGTGGCTTTCTTCCCTGTACCTTTCCGCTCGAATTCAGAG
AGTTGCCAGCTCTCTTTTAAAGGTGCAGGAGTCTACTGAGCATCGCAGCATAGGCAGGCCTTGCATCCGGTTTCAATTGTTGTCCATTTCGTGGGCAACG
ACCATTTCACGTCCTACGACGTTTATAGGTCAACGGGTCACACTAAGGTTGCGTTATCCACTGAGAAGCCTCCCCATAACCAAGTTACTATGGTGTCTCC
TACAACAGGTATTGCACTAGCTAAACTTGTAATTACAGTAGCTCCCCAAAAACTCATTTGTCCCCATGGCAACACATACCCAATAAAAGCTGTTACAATA